5aka
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5aka is ON HOLD Authors: vonLoeffelholz, O., Jiang, Q., Ariosa, A., Karuppasamy, M., Huard, K., Berger, I., Shan, S., Schaffitzel, C. Description: ...) |
|||
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==EM structure of ribosome-SRP-FtsY complex in closed state== | |
| + | <SX load='5aka' size='340' side='right' viewer='molstar' caption='[[5aka]], [[Resolution|resolution]] 5.70Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5aka]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AKA FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 5.7Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5aka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aka OCA], [https://pdbe.org/5aka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5aka RCSB], [https://www.ebi.ac.uk/pdbsum/5aka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5aka ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RL32_ECOLI RL32_ECOLI] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The signal recognition particle (SRP)-dependent pathway is essential for correct targeting of proteins to the membrane and subsequent insertion in the membrane or secretion. In Escherichia coli, the SRP and its receptor FtsY bind to ribosome-nascent chain complexes with signal sequences and undergo a series of distinct conformational changes, which ensures accurate timing and fidelity of protein targeting. Initial recruitment of the SRP receptor FtsY to the SRP-RNC complex results in GTP-independent binding of the SRP-FtsY GTPases at the SRP RNA tetraloop. In the presence of GTP, a closed state is adopted by the SRP-FtsY complex. The cryo-EM structure of the closed state reveals an ordered SRP RNA and SRP M domain with a signal sequence-bound. Van der Waals interactions between the finger loop and ribosomal protein L24 lead to a constricted signal sequence-binding pocket possibly preventing premature release of the signal sequence. Conserved M-domain residues contact ribosomal RNA helices 24 and 59. The SRP-FtsY GTPases are detached from the RNA tetraloop and flexible, thus liberating the ribosomal exit site for binding of the translocation machinery. | ||
| - | + | Ribosome-SRP-FtsY cotranslational targeting complex in the closed state.,von Loeffelholz O, Jiang Q, Ariosa A, Karuppasamy M, Huard K, Berger I, Shan SO, Schaffitzel C Proc Natl Acad Sci U S A. 2015 Mar 16. pii: 201424453. PMID:25775537<ref>PMID:25775537</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[ | + | </div> |
| - | [[ | + | <div class="pdbe-citations 5aka" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | |
| - | [[Category: | + | ==See Also== |
| - | [[Category: | + | *[[Ribosome 3D structures|Ribosome 3D structures]] |
| - | [[Category: Berger | + | *[[Signal recognition particle receptor 3D structures|Signal recognition particle receptor 3D structures]] |
| - | [[Category: Huard | + | == References == |
| - | [[Category: Jiang | + | <references/> |
| - | [[Category: Karuppasamy | + | __TOC__ |
| + | </SX> | ||
| + | [[Category: Escherichia coli K-12]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Ariosa A]] | ||
| + | [[Category: Berger I]] | ||
| + | [[Category: Huard K]] | ||
| + | [[Category: Jiang Q]] | ||
| + | [[Category: Karuppasamy M]] | ||
| + | [[Category: Schaffitzel C]] | ||
| + | [[Category: Shan S]] | ||
| + | [[Category: Von Loeffelholz O]] | ||
Current revision
EM structure of ribosome-SRP-FtsY complex in closed state
| |||||||||
