4wsp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:36, 27 September 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Racemic crystal structure of Rv1738 from Mycobacterium tuberculosis (Form-I)==
==Racemic crystal structure of Rv1738 from Mycobacterium tuberculosis (Form-I)==
-
<StructureSection load='4wsp' size='340' side='right' caption='[[4wsp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='4wsp' size='340' side='right'caption='[[4wsp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4wsp]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WSP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WSP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4wsp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WSP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WSP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4wpy|4wpy]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wsp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wsp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4wsp RCSB], [http://www.ebi.ac.uk/pdbsum/4wsp PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wsp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wsp OCA], [https://pdbe.org/4wsp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wsp RCSB], [https://www.ebi.ac.uk/pdbsum/4wsp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wsp ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Y1738_MYCTU Y1738_MYCTU]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Protein 3D structure can be a powerful predictor of function, but it often faces a critical roadblock at the crystallization step. Rv1738, a protein from Mycobacterium tuberculosis that is strongly implicated in the onset of nonreplicating persistence, and thereby latent tuberculosis, resisted extensive attempts at crystallization. Chemical synthesis of the l- and d-enantiomeric forms of Rv1738 enabled facile crystallization of the d/l-racemic mixture. The structure was solved by an ab initio approach that took advantage of the quantized phases characteristic of diffraction by centrosymmetric crystals. The structure, containing l- and d-dimers in a centrosymmetric space group, revealed unexpected homology with bacterial hibernation-promoting factors that bind to ribosomes and suppress translation. This suggests that the functional role of Rv1738 is to contribute to the shutdown of ribosomal protein synthesis during the onset of nonreplicating persistence of M. tuberculosis.
 +
 +
A functional role of Rv1738 in Mycobacterium tuberculosis persistence suggested by racemic protein crystallography.,Bunker RD, Mandal K, Bashiri G, Chaston JJ, Pentelute BL, Lott JS, Kent SB, Baker EN Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4310-5. doi:, 10.1073/pnas.1422387112. Epub 2015 Mar 23. PMID:25831534<ref>PMID:25831534</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4wsp" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Baker, E N]]
+
[[Category: Large Structures]]
-
[[Category: Bunker, R D]]
+
[[Category: Mycobacterium tuberculosis H37Rv]]
-
[[Category: Kent, S B.H]]
+
[[Category: Baker EN]]
-
[[Category: Mandal, K]]
+
[[Category: Bunker RD]]
-
[[Category: Hypoxic response]]
+
[[Category: Kent SBH]]
 +
[[Category: Mandal K]]

Current revision

Racemic crystal structure of Rv1738 from Mycobacterium tuberculosis (Form-I)

PDB ID 4wsp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools