3x44

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3x44" [edit=sysop:move=sysop])
Current revision (19:23, 29 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3x44 is ON HOLD until Paper Publication
+
==Crystal structure of O-ureido-L-serine-bound K43A mutant of O-ureido-L-serine synthase==
 +
<StructureSection load='3x44' size='340' side='right'caption='[[3x44]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3x44]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_lavendulae Streptomyces lavendulae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X44 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X44 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PUS:(E)-O-(CARBAMOYLAMINO)-N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE)-L-SERINE'>PUS</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x44 OCA], [https://pdbe.org/3x44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x44 RCSB], [https://www.ebi.ac.uk/pdbsum/3x44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x44 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DCSD_STRLA DCSD_STRLA] Involved in the biosynthesis of the antibiotic D-cycloserine (DCS), a cyclic structural analog of D-alanine, used as an antitubercular agent. Catalyzes the addition of hydroxyurea on O-acetyl-L-serine (OAS) to yield O-ureido-L-serine. It prefers sulfide as the second substrate, followed by hydroxyurea, L-homocysteine, and thiosulfate.<ref>PMID:20086163</ref> <ref>PMID:23529730</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
We have recently been successful in cloning a gene cluster necessary for the biosynthesis of D-cycloserine (D-CS) from D-CS-producing Streptomyces lavendulae ATCC11924. Although dcsD, one of the open reading frames located on the gene cluster, encodes a protein homologous to O-acetylserine sulfhydrylase that synthesizes L-cysteine using O-acetyl-L-serine together with sulfide, it functions to form O-ureido-L-serine as a D-CS biosynthetic intermediate, using O-acetyl-L-serine together with hydroxyurea (HU). Using crystallographic and mutational studies, three amino acid residues in DcsD that are important for the substrate preference toward HU were determined in the present study. We showed that two of the three residues are important for the binding of HU into the substrate-binding pocket. The other residue contributes to the formation of a loose hydrogen-bond network during the catalytic reaction. Information regarding the amino acid residues will be very useful in designing a new catalyst to synthesize the beta-substituted-L-alanine derivatives. This article is protected by copyright. All rights reserved.
-
Authors: Matoba, Y., Uda, N., Oda, K., Sugiyama, M.
+
The structural and mutational analyses of O-ureido-L-serine synthase necessary for D-cycloserine biosynthesis.,Uda N, Matoba Y, Oda K, Kumagai T, Sugiyama M FEBS J. 2015 Jul 24. doi: 10.1111/febs.13386. PMID:26207937<ref>PMID:26207937</ref>
-
Description: Crystal structure of O-ureido-L-serine-bound K43A mutant of O-ureido-L-serine synthase
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Oda, K]]
+
<div class="pdbe-citations 3x44" style="background-color:#fffaf0;"></div>
-
[[Category: Matoba, Y]]
+
== References ==
-
[[Category: Uda, N]]
+
<references/>
-
[[Category: Sugiyama, M]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Streptomyces lavendulae]]
 +
[[Category: Matoba Y]]
 +
[[Category: Oda K]]
 +
[[Category: Sugiyama M]]
 +
[[Category: Uda N]]

Current revision

Crystal structure of O-ureido-L-serine-bound K43A mutant of O-ureido-L-serine synthase

PDB ID 3x44

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools