4ufc

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m (Protected "4ufc" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 4ufc is ON HOLD until Paper Publication
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==Crystal structure of the GH95 enzyme BACOVA_03438==
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<StructureSection load='4ufc' size='340' side='right'caption='[[4ufc]], [[Resolution|resolution]] 2.81&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ufc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_ovatus Bacteroides ovatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UFC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UFC FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.81&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=GIV:BETA-L-GALACTOPYRANOSE'>GIV</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ufc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ufc OCA], [https://pdbe.org/4ufc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ufc RCSB], [https://www.ebi.ac.uk/pdbsum/4ufc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ufc ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A7M011_BACO1 A7M011_BACO1]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The structure of the human gut microbiota is controlled primarily through the degradation of complex dietary carbohydrates, but the extent to which carbohydrate breakdown products are shared between members of the microbiota is unclear. We show here, using xylan as a model, that sharing the breakdown products of complex carbohydrates by key members of the microbiota, such as Bacteroides ovatus, is dependent on the complexity of the target glycan. Characterization of the extensive xylan degrading apparatus expressed by B. ovatus reveals that the breakdown of the polysaccharide by the human gut microbiota is significantly more complex than previous models suggested, which were based on the deconstruction of xylans containing limited monosaccharide side chains. Our report presents a highly complex and dynamic xylan degrading apparatus that is fine-tuned to recognize the different forms of the polysaccharide presented to the human gut microbiota.
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Authors: Rogowski, A., Briggs, J.A., Mortimer, J.C., Tryfona, T., Terrapon, N., Lowe, E.C., Basle, A., Morland, C., Day, A.M., Zheng, H., Rogers, T.E., Thompson, P., Hawkins, A.R., Yadav, M.P., Henrissat, B., Martens, E.C., Dupree, P., Gilbert, H.J., Bolam, D.N.
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Glycan complexity dictates microbial resource allocation in the large intestine.,Rogowski A, Briggs JA, Mortimer JC, Tryfona T, Terrapon N, Lowe EC, Basle A, Morland C, Day AM, Zheng H, Rogers TE, Thompson P, Hawkins AR, Yadav MP, Henrissat B, Martens EC, Dupree P, Gilbert HJ, Bolam DN Nat Commun. 2015 Jun 26;6:7481. doi: 10.1038/ncomms8481. PMID:26112186<ref>PMID:26112186</ref>
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Description: Crystal structure of the GH95 enzyme BACOVA_03438
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Morland, C]]
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<div class="pdbe-citations 4ufc" style="background-color:#fffaf0;"></div>
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[[Category: Hawkins, A.R]]
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== References ==
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[[Category: Bolam, D.N]]
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<references/>
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[[Category: Zheng, H]]
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__TOC__
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[[Category: Mortimer, J.C]]
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</StructureSection>
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[[Category: Briggs, J.A]]
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[[Category: Bacteroides ovatus]]
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[[Category: Martens, E.C]]
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[[Category: Large Structures]]
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[[Category: Gilbert, H.J]]
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[[Category: Basle A]]
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[[Category: Tryfona, T]]
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[[Category: Bolam DN]]
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[[Category: Yadav, M.P]]
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[[Category: Briggs JA]]
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[[Category: Henrissat, B]]
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[[Category: Day AM]]
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[[Category: Lowe, E.C]]
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[[Category: Dupree P]]
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[[Category: Thompson, P]]
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[[Category: Gilbert HJ]]
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[[Category: Terrapon, N]]
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[[Category: Hawkins AR]]
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[[Category: Rogers, T.E]]
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[[Category: Henrissat B]]
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[[Category: Day, A.M]]
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[[Category: Lowe EC]]
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[[Category: Basle, A]]
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[[Category: Martens EC]]
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[[Category: Dupree, P]]
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[[Category: Morland C]]
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[[Category: Rogowski, A]]
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[[Category: Mortimer JC]]
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[[Category: Rogers TE]]
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[[Category: Rogowski A]]
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[[Category: Terrapon N]]
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[[Category: Thompson P]]
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[[Category: Tryfona T]]
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[[Category: Yadav MP]]
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[[Category: Zheng H]]

Current revision

Crystal structure of the GH95 enzyme BACOVA_03438

PDB ID 4ufc

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