This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rae

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:21, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rae.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1==
-
|PDB= 2rae |SIZE=350|CAPTION= <scene name='initialview01'>2rae</scene>, resolution 2.20&Aring;
+
<StructureSection load='2rae' size='340' side='right'caption='[[2rae]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2rae]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RAE FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
|GENE= RHA08332, RHA1_ro06070 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=101510 Rhodococcus sp. RHA1])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rae OCA], [https://pdbe.org/2rae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rae RCSB], [https://www.ebi.ac.uk/pdbsum/2rae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rae ProSAT], [https://www.topsan.org/Proteins/MCSG/2rae TOPSAN]</span></td></tr>
-
}}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q0S3N9_RHOJR Q0S3N9_RHOJR]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2rae_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rae ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1'''
+
==See Also==
-
 
+
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2RAE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp._rha1 Rhodococcus sp. rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAE OCA].
+
[[Category: Large Structures]]
-
[[Category: Rhodococcus sp. rha1]]
+
[[Category: Rhodococcus jostii RHA1]]
-
[[Category: Single protein]]
+
[[Category: Edwards AM]]
-
[[Category: Edwards, A M.]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Kagan O]]
-
[[Category: Kagan, O.]]
+
[[Category: Savchenko A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Skarina T]]
-
[[Category: Savchenko, A.]]
+
[[Category: Zhang R]]
-
[[Category: Skarina, T.]]
+
-
[[Category: Zhang, R.]]
+
-
[[Category: dna-binding]]
+
-
[[Category: mcsg]]
+
-
[[Category: midwest center for structural genomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: rha08332]]
+
-
[[Category: structural genomic]]
+
-
[[Category: tetr/acrr family transcriptional regulator]]
+
-
[[Category: transcription regulation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:34:04 2008''
+

Current revision

Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1

PDB ID 2rae

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools