4crz

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==Direct visualisation of strain-induced protein prost-translational modification==
==Direct visualisation of strain-induced protein prost-translational modification==
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<StructureSection load='4crz' size='340' side='right' caption='[[4crz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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<StructureSection load='4crz' size='340' side='right'caption='[[4crz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4crz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CRZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CRZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4crz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CRZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4cry|4cry]], [[4cs0|4cs0]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4crz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4crz OCA], [https://pdbe.org/4crz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4crz RCSB], [https://www.ebi.ac.uk/pdbsum/4crz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4crz ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_1-decarboxylase Aspartate 1-decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.11 4.1.1.11] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4crz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4crz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4crz RCSB], [http://www.ebi.ac.uk/pdbsum/4crz PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>
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[https://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Coenzyme A (CoA) is an ubiquitous and essential cofactor, synthesized from the precursor pantothenate. Vitamin biosynthetic pathways are normally tightly regulated, including the pathway from pantothenate to CoA. However, no regulation of pantothenate biosynthesis has been identified. We have recently described an additional component in the pantothenate biosynthetic pathway, PanZ, which promotes the activation of the zymogen, PanD, to form aspartate alpha-decarboxylase (ADC) in a CoA-dependent manner. Here we report the structure of PanZ in complex with PanD, which reveals the structural basis for the CoA dependence of this interaction and activation. In addition, we show that PanZ acts as a CoA-dependent inhibitor of ADC catalysis. This inhibitory effect can effectively regulate the biosynthetic pathway to pantothenate, and thereby also regulate CoA biosynthesis. This represents a previously unobserved mode of metabolic regulation whereby a cofactor-utilizing protein negatively regulates the biosynthesis of the same cofactor.
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The Structure of the PanD/PanZ Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.,Monteiro DC, Patel V, Bartlett CP, Nozaki S, Grant TD, Gowdy JA, Thompson GS, Kalverda AP, Snell EH, Niki H, Pearson AR, Webb ME Chem Biol. 2015 Apr 23;22(4):492-503. doi: 10.1016/j.chembiol.2015.03.017. PMID:25910242<ref>PMID:25910242</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4crz" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Aspartate decarboxylase 3D structures|Aspartate decarboxylase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aspartate 1-decarboxylase]]
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[[Category: Escherichia coli K-12]]
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[[Category: Bartlett, C P]]
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[[Category: Large Structures]]
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[[Category: Gowdy, J A]]
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[[Category: Bartlett CP]]
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[[Category: Grant, T D]]
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[[Category: Gowdy JA]]
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[[Category: Monteiro, D C.F]]
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[[Category: Grant TD]]
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[[Category: Niki, H]]
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[[Category: Monteiro DCF]]
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[[Category: Nozaki, S]]
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[[Category: Niki H]]
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[[Category: Patel, V]]
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[[Category: Nozaki S]]
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[[Category: Pearson, A R]]
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[[Category: Patel V]]
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[[Category: Snell, E H]]
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[[Category: Pearson AR]]
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[[Category: Webb, M E]]
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[[Category: Snell EH]]
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[[Category: Coenzyme some]]
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[[Category: Webb ME]]
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[[Category: Lyase]]
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[[Category: Pantothenate]]
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[[Category: Radiation damage]]
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Direct visualisation of strain-induced protein prost-translational modification

PDB ID 4crz

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