Sandbox Reserved 1068
From Proteopedia
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| - | {{Sandbox_Reserved_Butler_CH462_Sp2015_#}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE --> | + | *[[User:Jessica Klingensmith/Sandbox1]]{{Sandbox_Reserved_Butler_CH462_Sp2015_#}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE --> |
| - | =='' | + | ==''ZN Ion Transporter YiiP found in E.Coli''== |
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| - | == | + | <StructureSection load='3H90' size='350' side='right' caption='ZN Ion Transporter YiiP' scene='White residues'> |
| - | '' | + | |
| - | [[Image: | + | This is a default text for your page, Here is my image! [[Image:3h90.0_chimera_tm_350_350.png |100px|left|thumb|Figure Legend]] ''''''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. |
| + | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
| - | ==Structure== | ||
| - | [[Image:Active_site_cleft.png|300 px|left|thumb|Figure 2: This shows a single sub unit of MbtI, with the active site cleft located at the lower left hand side of the image.]] | ||
| - | The crystal asymmetric unit was found to contain <scene name='69/694235/3log/1'> four MbtI molecules</scene>, however crystal packing and size exclusion chromatography data suggest a monomeric enzyme. There are no significant structural changes between the four monomers excepts from the localized differences in the active site. The overall molecular structure consist of a polypeptide of 450 residues that forms one large single domain with a similar fold to other chromate-utilizing enzymes. The core of the protein is formed by 21 beta-strands folded into a twisted beta-sandwich. The protein's core is then surrounded by 10 alpha helices. | ||
| - | == | + | == Biological Function == |
| + | <scene name='69/694235/White_residues/1'>zoom of white residues</scene> and also this view: | ||
| + | <scene name='69/694235/White_residues2/1'>alternate angle</scene> | ||
| - | + | === SubHeading 1 === | |
| - | + | == Structural Overview == | |
| + | === Subheading 2 === | ||
| - | + | == Mechanism of Action == | |
| - | == | + | == Zinc Ligand(s) == |
| - | == | + | == Other Ligands == |
| + | <scene name='69/694235/Asp49/1'>Asp49</scene> | ||
| - | == Structural highlights == | ||
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| - | ==Mechanism== | ||
| - | A magnesium ion in the active site orients the C1 carboxyl group of chorismate. A lysine residue then serves as a general base for the activation of a water molecule to attack at C2 | ||
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| - | The catalytic mechanism for conversion of isochorismate to salicylate by MbtI is a sigmatropic, pericyclic mechanism that is pH-dependent. Chromate mutase activity is only observed in the absence of magnesium ion in the active site while salicylate synthase activity is depended on magnesium ion. The active site of MbtI is altered by the removal of the magnesium cofactor causing chromate mutase activity. MbtI has differing binding modes for chromate that leads to different substrate conformations/transition states and resulting in different products. | ||
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| - | ==Inhibition Studies== | ||
| + | <scene name='69/694235/His153/1'>His153</scene> | ||
| + | <scene name='69/694235/Asp153/2'>Asp157</scene> | ||
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
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</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
| - | + | <references/> | |
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Current revision
| This Sandbox is Reserved from 02/09/2015, through 05/31/2016 for use in the course "CH462: Biochemistry 2" taught by Geoffrey C. Hoops at the Butler University. This reservation includes Sandbox Reserved 1051 through Sandbox Reserved 1080. |
To get started:
More help: Help:Editing |
ZN Ion Transporter YiiP found in E.Coli
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
