2v38

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:04, 13 December 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2v38.gif|left|200px]]
 
-
{{Structure
+
==Family 5 endoglucanase Cel5A from Bacillus agaradhaerens in complex with cellobio-derived noeuromycin==
-
|PDB= 2v38 |SIZE=350|CAPTION= <scene name='initialview01'>2v38</scene>, resolution 1.50&Aring;
+
<StructureSection load='2v38' size='340' side='right'caption='[[2v38]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Gol+Binding+Site+For+Residue+A+1305'>AC1</scene>, <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+1306'>AC2</scene>, <scene name='pdbsite=AC3:Gol+Binding+Site+For+Residue+A+1307'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+A+1308'>AC4</scene>, <scene name='pdbsite=AC5:Noy+Binding+Site+For+Residue+A+1309'>AC5</scene> and <scene name='pdbsite=AC6:Idr+Binding+Site+For+Residue+A+1310'>AC6</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=IDR:L-IDURONIC+ACID'>IDR</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=NOY:(2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-2,3,4-TRIOL'>NOY</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[2v38]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salipaludibacillus_agaradhaerens Salipaludibacillus agaradhaerens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V38 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V38 FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IDR:L-IDURONIC+ACID'>IDR</scene>, <scene name='pdbligand=IFL:(3S,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PIPERIDIN-2-ONE'>IFL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v38 OCA], [https://pdbe.org/2v38 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v38 RCSB], [https://www.ebi.ac.uk/pdbsum/2v38 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v38 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GUN5_SALAG GUN5_SALAG]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v38_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v38 ConSurf].
 +
<div style="clear:both"></div>
-
'''FAMILY 5 ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHAERENS IN COMPLEX WITH CELLOBIO-DERIVED NOEUROMYCIN'''
+
==See Also==
-
 
+
*[[Glucanase 3D structures|Glucanase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2V38 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_agaradhaerens Bacillus agaradhaerens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V38 OCA].
+
[[Category: Large Structures]]
-
[[Category: Bacillus agaradhaerens]]
+
[[Category: Salipaludibacillus agaradhaerens]]
-
[[Category: Cellulase]]
+
[[Category: Davies GJ]]
-
[[Category: Single protein]]
+
[[Category: Gloster TM]]
-
[[Category: Davies, G J.]]
+
[[Category: Meloncelli PJ]]
-
[[Category: Gloster, T M.]]
+
[[Category: Money VA]]
-
[[Category: Meloncelli, P J.]]
+
[[Category: Stick RV]]
-
[[Category: Money, V A.]]
+
[[Category: Tarling CA]]
-
[[Category: Stick, R V.]]
+
[[Category: Withers SG]]
-
[[Category: Tarling, C A.]]
+
-
[[Category: Withers, S G.]]
+
-
[[Category: GOL]]
+
-
[[Category: IDR]]
+
-
[[Category: NOY]]
+
-
[[Category: SO4]]
+
-
[[Category: carbohydrate metabolism]]
+
-
[[Category: cellulose degradation]]
+
-
[[Category: endoglucanase]]
+
-
[[Category: family 5]]
+
-
[[Category: glycosidase]]
+
-
[[Category: glycoside hydrolase]]
+
-
[[Category: hydrolase]]
+
-
[[Category: noeuromycin]]
+
-
[[Category: polysaccharide degradation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:42:47 2008''
+

Current revision

Family 5 endoglucanase Cel5A from Bacillus agaradhaerens in complex with cellobio-derived noeuromycin

PDB ID 2v38

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2v38"
Personal tools