2v8u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:56, 9 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2v8u.jpg|left|200px]]
 
-
{{Structure
+
==Atomic resolution structure of Mn catalase from Thermus Thermophilus==
-
|PDB= 2v8u |SIZE=350|CAPTION= <scene name='initialview01'>2v8u</scene>, resolution 1.05&Aring;
+
<StructureSection load='2v8u' size='340' side='right'caption='[[2v8u]], [[Resolution|resolution]] 1.05&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Chain+B'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=O:OXYGEN ATOM'>O</scene>
+
<table><tr><td colspan='2'>[[2v8u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V8U FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v8u OCA], [https://pdbe.org/2v8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v8u RCSB], [https://www.ebi.ac.uk/pdbsum/2v8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v8u ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q84DB4_THETH Q84DB4_THETH]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/2v8u_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v8u ConSurf].
 +
<div style="clear:both"></div>
-
'''ATOMIC RESOLUTION STRUCTURE OF MN CATALASE FROM THERMUS THERMOPHILUS'''
+
==See Also==
-
 
+
*[[Catalase 3D structures|Catalase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2V8U is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8U OCA].
+
[[Category: Large Structures]]
-
[[Category: Catalase]]
+
[[Category: Thermus thermophilus HB27]]
-
[[Category: Single protein]]
+
[[Category: Antonyuk SV]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Artymiuk PJ]]
-
[[Category: Antonyuk, S V.]]
+
[[Category: Barynin VV]]
-
[[Category: Artymiuk, P J.]]
+
[[Category: Harrison PM]]
-
[[Category: Barynin, V V.]]
+
[[Category: Lamsin VS]]
-
[[Category: Harrison, P M.]]
+
[[Category: Melik-Adamyan WR]]
-
[[Category: Lamsin, V S.]]
+
[[Category: Popov AN]]
-
[[Category: Melik-Adamyan, W R.]]
+
[[Category: Vaguine AA]]
-
[[Category: Popov, A N.]]
+
-
[[Category: Vaguine, A A.]]
+
-
[[Category: LI]]
+
-
[[Category: MN]]
+
-
[[Category: O]]
+
-
[[Category: SO4]]
+
-
[[Category: manganese catalase]]
+
-
[[Category: oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:44:20 2008''
+

Current revision

Atomic resolution structure of Mn catalase from Thermus Thermophilus

PDB ID 2v8u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools