2vix

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:38, 30 March 2022) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2vix.jpg|left|200px]]
 
-
{{Structure
+
==Methylated Shigella flexneri MxiC==
-
|PDB= 2vix |SIZE=350|CAPTION= <scene name='initialview01'>2vix</scene>, resolution 2.85&Aring;
+
<StructureSection load='2vix' size='340' side='right'caption='[[2vix]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Gol+Binding+Site+For+Chain+B'>AC1</scene> and <scene name='pdbsite=AC2:Act+Binding+Site+For+Chain+A'>AC2</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[2vix]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"shigella_paradysenteriae"_weldin_1927 "shigella paradysenteriae" weldin 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VIX FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
|GENE=
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vix FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vix OCA], [https://pdbe.org/2vix PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vix RCSB], [https://www.ebi.ac.uk/pdbsum/2vix PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vix ProSAT]</span></td></tr>
-
 
+
</table>
-
'''METHYLATED SHIGELLA FLEXNERI MXIC'''
+
== Function ==
-
 
+
[[https://www.uniprot.org/uniprot/MXIC_SHIFL MXIC_SHIFL]] Necessary for the secretion of IPA invasins.
-
 
+
== Evolutionary Conservation ==
-
==Overview==
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vix_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vix ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
Many Gram-negative pathogenic bacteria use a complex macromolecular machine, known as the type 3 secretion system (T3SS), to transfer virulence proteins into host cells. The T3SS is composed of a cytoplasmic bulb, a basal body spanning the inner and outer bacterial membranes, and an extracellular needle. Secretion is regulated by both cytoplasmic and inner membrane proteins that must respond to specific signals in order to ensure that virulence proteins are not secreted before contact with a eukaryotic cell. This negative regulation is mediated, in part, by a family of proteins that are thought to physically block the entrance to the secretion apparatus until an appropriate signal is received following host cell contact. Despite weak sequence homology between proteins of this family, the crystal structures of Shigella flexneri MxiC we present here confirm the conservation of domain topology with the homologue from Yersinia sp. Interestingly, comparison of the Shigella and Yersinia structures reveals a significant structural change that results in substantial domain re-arrangement and opening of one face of the molecule. The conservation of a negatively charged patch on this face suggests it may have a role in binding other components of the T3SS.
Many Gram-negative pathogenic bacteria use a complex macromolecular machine, known as the type 3 secretion system (T3SS), to transfer virulence proteins into host cells. The T3SS is composed of a cytoplasmic bulb, a basal body spanning the inner and outer bacterial membranes, and an extracellular needle. Secretion is regulated by both cytoplasmic and inner membrane proteins that must respond to specific signals in order to ensure that virulence proteins are not secreted before contact with a eukaryotic cell. This negative regulation is mediated, in part, by a family of proteins that are thought to physically block the entrance to the secretion apparatus until an appropriate signal is received following host cell contact. Despite weak sequence homology between proteins of this family, the crystal structures of Shigella flexneri MxiC we present here confirm the conservation of domain topology with the homologue from Yersinia sp. Interestingly, comparison of the Shigella and Yersinia structures reveals a significant structural change that results in substantial domain re-arrangement and opening of one face of the molecule. The conservation of a negatively charged patch on this face suggests it may have a role in binding other components of the T3SS.
-
==About this Structure==
+
Structures of the Shigella flexneri type 3 secretion system protein MxiC reveal conformational variability amongst homologues.,Deane JE, Roversi P, King C, Johnson S, Lea SM J Mol Biol. 2008 Apr 4;377(4):985-92. Epub 2008 Feb 4. PMID:18304577<ref>PMID:18304577</ref>
-
2VIX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIX OCA].
+
-
 
+
-
==Reference==
+
-
Structures of the Shigella flexneri Type 3 Secretion System Protein MxiC Reveal Conformational Variability Amongst Homologues., Deane JE, Roversi P, King C, Johnson S, Lea SM, J Mol Biol. 2008 Feb 4;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18304577 18304577]
+
-
[[Category: Shigella flexneri]]
+
-
[[Category: Single protein]]
+
-
[[Category: Deane, J E.]]
+
-
[[Category: Johnson, S.]]
+
-
[[Category: King, C.]]
+
-
[[Category: Lea, S M.]]
+
-
[[Category: Roversi, P.]]
+
-
[[Category: ACT]]
+
-
[[Category: GOL]]
+
-
[[Category: mxic]]
+
-
[[Category: plasmid]]
+
-
[[Category: secretion regulation]]
+
-
[[Category: shigella flexneri]]
+
-
[[Category: t3ss]]
+
-
[[Category: transport protein]]
+
-
[[Category: type three secretion system]]
+
-
[[Category: virulence]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:47:05 2008''
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2vix" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Shigella paradysenteriae weldin 1927]]
 +
[[Category: Large Structures]]
 +
[[Category: Deane, J E]]
 +
[[Category: Johnson, S]]
 +
[[Category: King, C]]
 +
[[Category: Lea, S M]]
 +
[[Category: Roversi, P]]
 +
[[Category: Secretion regulation]]
 +
[[Category: T3ss]]
 +
[[Category: Transport protein]]
 +
[[Category: Type three secretion system]]
 +
[[Category: Virulence]]

Current revision

Methylated Shigella flexneri MxiC

PDB ID 2vix

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2vix"
Personal tools