4zbl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:27, 15 November 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4zbl is ON HOLD until Paper Publication
+
==Phototoxic fluorescent protein mKillerOrange==
 +
<StructureSection load='4zbl' size='340' side='right'caption='[[4zbl]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4zbl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hydrozoa Hydrozoa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZBL FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4M9:(4Z)-4-IMINO-4-[(4Z)-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-1-(2-OXOETHYL)-4,5-DIHYDRO-1H-IMIDAZOL-2-YL]BUTANAMIDE'>4M9</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zbl OCA], [https://pdbe.org/4zbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zbl RCSB], [https://www.ebi.ac.uk/pdbsum/4zbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zbl ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2TCH5_9CNID Q2TCH5_9CNID]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Phototoxic fluorescent proteins represent a sparse group of genetically encoded photosensitizers that could be used for precise light-induced inactivation of target proteins, DNA damage, and cell killing. Only two such GFP-based fluorescent proteins (FPs), KillerRed and its monomeric variant SuperNova, were described up to date. Here, we present a crystallographic study of their two orange successors, dimeric KillerOrange and monomeric mKillerOrange, at 1.81 and 1.57 A resolution, respectively. They are the first orange-emitting protein photosensitizers with a tryptophan-based chromophore (Gln65-Trp66-Gly67). Same as their red progenitors, both orange photosensitizers have a water-filled channel connecting the chromophore to the beta-barrel exterior and enabling transport of ROS. In both proteins, Trp66 of the chromophore adopts an unusual trans-cis conformation stabilized by H-bond with the nearby Gln159. This trans-cis conformation along with the water channel was shown to be a key structural feature providing bright orange emission and phototoxicity of both examined orange photosensitizers.
-
Authors: Pletnev, V.Z., Pletneva, N.V., Pletnev, S.V.
+
Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore.,Pletneva NV, Pletnev VZ, Sarkisyan KS, Gorbachev DA, Egorov ES, Mishin AS, Lukyanov KA, Dauter Z, Pletnev S PLoS One. 2015 Dec 23;10(12):e0145740. doi: 10.1371/journal.pone.0145740., eCollection 2015. PMID:26699366<ref>PMID:26699366</ref>
-
Description: Phototoxic fluorescent protein mKillerOrange
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Pletnev, V.Z]]
+
<div class="pdbe-citations 4zbl" style="background-color:#fffaf0;"></div>
-
[[Category: Pletneva, N.V]]
+
== References ==
-
[[Category: Pletnev, S.V]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Hydrozoa]]
 +
[[Category: Large Structures]]
 +
[[Category: Pletnev SV]]
 +
[[Category: Pletnev VZ]]
 +
[[Category: Pletneva NV]]

Current revision

Phototoxic fluorescent protein mKillerOrange

PDB ID 4zbl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools