4zet

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'''Unreleased structure'''
 
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The entry 4zet is ON HOLD
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==Blood dendritic cell antigen 2 (BDCA-2) complexed with GalGlcNAcMan==
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<StructureSection load='4zet' size='340' side='right'caption='[[4zet]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4zet]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZET OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZET FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zet OCA], [https://pdbe.org/4zet PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zet RCSB], [https://www.ebi.ac.uk/pdbsum/4zet PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zet ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CLC4C_HUMAN CLC4C_HUMAN] Involved in antigen-capturing. Target ligand into antigen processing and peptide-loading compartments for presentation to T-cells. May mediate potent inhibition of induction of IFN-alpha/beta expression in plasmacytoid dendritic cells. May act as a signaling receptor that activates protein-tyrosine kinases and mobilizes intracellular calcium. Does not seem to bind mannose.<ref>PMID:11748283</ref> <ref>PMID:11031109</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Blood dendritic cell antigen 2 (BDCA-2; also designated CLEC4C or CD303) is uniquely expressed on plasmacytoid dendritic cells. Stimulation of BDCA-2 with antibodies leads to an anti-inflammatory response in these cells, but the natural ligands for the receptor are not known. The C-type carbohydrate-recognition domain (CRD) in the extracellular portion of BDCA-2 contains a signature motif typical of C-type animal lectins that bind mannose, glucose or GlcNAc, yet it has been reported that BDCA-2 binds selectively to galactose-terminated, bi-antennary N-linked glycans. A combination of glycan array analysis and binding competition studies with monosaccharides and natural and synthetic oligosaccharides have been used to define the binding epitope for BDCA-2 as the trisaccharides Galbeta1-3/4GlcNAcbeta1-2Man. X-ray crystallography and mutagenesis studies show that mannose is ligated to the conserved Ca2+ in the primary binding site that is characteristic of C-type CRDs, and the GlcNAc and galactose residues make additional interactions in a wide, shallow groove adjacent to the primary binding site. As predicted from these studies, BDCA-2 binds to IgG, which bears galactose-terminated glycans that are not commonly found attached to other serum glycoproteins. Thus, BDCA-2 has the potential to serve as a previously unrecognized immunoglobulin Fc receptor.
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Authors: Jegouzo, S.A.F., Feinberg, H., Dungarwalla, T., Drickamer, K., Weis, W.I., Taylor, M.E.
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A novel mechanism for binding of galactose-terminated glycans by the C-type carbohydrate-recognition domain in blood dendritic cell antigen 2.,Jegouzo SA, Feinberg H, Dungarwalla T, Drickamer K, Weis WI, Taylor ME J Biol Chem. 2015 May 20. pii: jbc.M115.660613. PMID:25995448<ref>PMID:25995448</ref>
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Description: Blood dendritic cell antigen 2 (BDCA-2) complexed with GalGlcNAcMan
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Feinberg, H]]
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<div class="pdbe-citations 4zet" style="background-color:#fffaf0;"></div>
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[[Category: Taylor, M.E]]
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== References ==
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[[Category: Dungarwalla, T]]
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<references/>
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[[Category: Drickamer, K]]
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__TOC__
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[[Category: Weis, W.I]]
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</StructureSection>
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[[Category: Jegouzo, S.A.F]]
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Drickamer K]]
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[[Category: Dungarwalla T]]
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[[Category: Feinberg H]]
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[[Category: Jegouzo SAF]]
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[[Category: Taylor ME]]
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[[Category: Weis WI]]

Current revision

Blood dendritic cell antigen 2 (BDCA-2) complexed with GalGlcNAcMan

PDB ID 4zet

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