4zm2

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(New page: '''Unreleased structure''' The entry 4zm2 is ON HOLD Authors: Garcia-Pino, A., Loris, R. Description: Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat in a ...)
Current revision (11:33, 9 May 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 4zm2 is ON HOLD
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==Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat in a monoclinic space group==
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<StructureSection load='4zm2' size='340' side='right'caption='[[4zm2]], [[Resolution|resolution]] 3.88&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4zm2]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_P1 Escherichia virus P1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZM2 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.88&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zm2 OCA], [https://pdbe.org/4zm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zm2 RCSB], [https://www.ebi.ac.uk/pdbsum/4zm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zm2 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PHD_BPP1 PHD_BPP1] Antitoxin component of a toxin-antitoxin (TA) module. A labile antitoxin that binds to the doc toxin and neutralizes its toxic effect. Bacteriophage P1 lysogenizes bacteria as a low-copy number plasmid. Phd and doc proteins function in unison to stabilize plasmid number by inducing a lethal response to P1 plasmid prophage loss.<ref>PMID:9829946</ref> <ref>PMID:18398006</ref> Binds to its own promoter repressing its expression; toxin doc acts as a corepressor or derepressor depending on the ratio, repressing or inducing expression.<ref>PMID:9829946</ref> <ref>PMID:18398006</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Conditional cooperativity is a common mechanism involved in transcriptional regulation of prokaryotic type II toxin-antitoxin operons and is intricately related to bacterial persistence. It allows the toxin component of a toxin-antitoxin module to act as a co-repressor at low doses of toxin as compared to antitoxin. When toxin level exceeds a certain threshold, however, the toxin becomes a de-repressor. Most antitoxins contain an intrinsically disordered region (IDR) that typically is involved in toxin neutralization and repressor complex formation. To address how the antitoxin IDR is involved in transcription regulation, we studied the phd-doc operon from bacteriophage P1. We provide evidence that the IDR of Phd provides an entropic barrier precluding full operon repression in the absence of Doc. Binding of Doc results in a cooperativity switch and consequent strong operon repression, enabling context-specific modulation of the regulatory process. Variations of this theme are likely to be a common mechanism in the autoregulation of bacterial operons that involve intrinsically disordered regions.
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Authors: Garcia-Pino, A., Loris, R.
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An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.,Garcia-Pino A, De Gieter S, Talavera A, De Greve H, Efremov RG, Loris R Nat Chem Biol. 2016 May 2. doi: 10.1038/nchembio.2078. PMID:27159580<ref>PMID:27159580</ref>
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Description: Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat in a monoclinic space group
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Garcia-Pino, A]]
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<div class="pdbe-citations 4zm2" style="background-color:#fffaf0;"></div>
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[[Category: Loris, R]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia virus P1]]
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[[Category: Large Structures]]
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[[Category: Garcia-Pino A]]
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[[Category: Loris R]]

Current revision

Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat in a monoclinic space group

PDB ID 4zm2

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