4zqd

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(New page: '''Unreleased structure''' The entry 4zqd is ON HOLD until Paper Publication Authors: Wu, D., Potluri, N., Lu, J., Kim, Y., Rastinejad, F. Description: Crystal Structure of the Heterod...)
Current revision (08:22, 27 September 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 4zqd is ON HOLD until Paper Publication
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==Crystal Structure of the Heterodimeric HIF-2a:ARNT Complex with the Benzoxadiazole Antagonist 0X3==
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<StructureSection load='4zqd' size='340' side='right'caption='[[4zqd]], [[Resolution|resolution]] 2.87&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4zqd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZQD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZQD FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.87&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0X3:N-(3-CHLORO-5-FLUOROPHENYL)-4-NITRO-2,1,3-BENZOXADIAZOL-5-AMINE'>0X3</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zqd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zqd OCA], [https://pdbe.org/4zqd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zqd RCSB], [https://www.ebi.ac.uk/pdbsum/4zqd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zqd ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ARNT_MOUSE ARNT_MOUSE] Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens. The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The hypoxia-inducible factors (HIFs) coordinate cellular adaptations to low oxygen stress by regulating transcriptional programs in erythropoiesis, angiogenesis and metabolism. These programs promote the growth and progression of many tumours, making HIFs attractive anticancer targets. Transcriptionally active HIFs consist of HIF-alpha and ARNT (also called HIF-1beta) subunits. Here we describe crystal structures for each of mouse HIF-2alpha-ARNT and HIF-1alpha-ARNT heterodimers in states that include bound small molecules and their hypoxia response element. A highly integrated quaternary architecture is shared by HIF-2alpha-ARNT and HIF-1alpha-ARNT, wherein ARNT spirals around the outside of each HIF-alpha subunit. Five distinct pockets are observed that permit small-molecule binding, including PAS domain encapsulated sites and an interfacial cavity formed through subunit heterodimerization. The DNA-reading head rotates, extends and cooperates with a distal PAS domain to bind hypoxia response elements. HIF-alpha mutations linked to human cancers map to sensitive sites that establish DNA binding and the stability of PAS domains and pockets.
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Authors: Wu, D., Potluri, N., Lu, J., Kim, Y., Rastinejad, F.
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Structural integration in hypoxia-inducible factors.,Wu D, Potluri N, Lu J, Kim Y, Rastinejad F Nature. 2015 Aug 5. doi: 10.1038/nature14883. PMID:26245371<ref>PMID:26245371</ref>
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Description: Crystal Structure of the Heterodimeric HIF-2a:ARNT Complex with the Benzoxadiazole Antagonist 0X3
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Potluri, N]]
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<div class="pdbe-citations 4zqd" style="background-color:#fffaf0;"></div>
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[[Category: Lu, J]]
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[[Category: Rastinejad, F]]
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==See Also==
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[[Category: Wu, D]]
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*[[3D structures of hypoxia-inducible factor|3D structures of hypoxia-inducible factor]]
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[[Category: Kim, Y]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Kim Y]]
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[[Category: Lu J]]
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[[Category: Potluri N]]
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[[Category: Rastinejad F]]
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[[Category: Wu D]]

Current revision

Crystal Structure of the Heterodimeric HIF-2a:ARNT Complex with the Benzoxadiazole Antagonist 0X3

PDB ID 4zqd

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