361d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:39, 7 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:361d.gif|left|200px]]
 
-
{{Structure
+
==CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP==
-
|PDB= 361d |SIZE=350|CAPTION= <scene name='initialview01'>361d</scene>, resolution 3.000&Aring;
+
<StructureSection load='361d' size='340' side='right'caption='[[361d]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[361d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=361D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=361D FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=361d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=361d OCA], [https://pdbe.org/361d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=361d RCSB], [https://www.ebi.ac.uk/pdbsum/361d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=361d ProSAT]</span></td></tr>
-
}}
+
</table>
-
 
+
__TOC__
-
'''CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP'''
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
 
+
[[Category: Betzel C]]
-
==Overview==
+
[[Category: Erdmann VA]]
-
The synthetic RNA fragment 5'-CUGGGCGG(GCGA)CCGCCUGG (nucleotides in parentheses indicate the loop region) corresponds to the natural sequence of domain E from nucleotides 79-97 of the Thermus flavus 5S rRNA including a hairpin loop. The RNA structure determined at 3.0 A and refined to an R-value of 24.1% also represents the first X-ray structure GNRA tetraloop. The loop is in distinctly different conformation from other GNRA tetraloops analyzed by NMR. The conformation of the two molecules in the asymmetric unit is influenced and stabilized by specific intermolecular contacts. The structural features presented here give evidence for the ability of RNA molecules to adapt to specific environments.
+
[[Category: Lorenz S]]
-
 
+
[[Category: Nolte A]]
-
==About this Structure==
+
[[Category: Perbandt M]]
-
361D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=361D OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of domain E of Thermus flavus 5S rRNA: a helical RNA structure including a hairpin loop., Perbandt M, Nolte A, Lorenz S, Bald R, Betzel C, Erdmann VA, FEBS Lett. 1998 Jun 12;429(2):211-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9650592 9650592]
+
-
[[Category: Protein complex]]
+
-
[[Category: Betzel, C.]]
+
-
[[Category: Erdmann, V A.]]
+
-
[[Category: Lorenz, S.]]
+
-
[[Category: Nolte, A.]]
+
-
[[Category: Perbandt, M.]]
+
-
[[Category: hairpin]]
+
-
[[Category: mismatched]]
+
-
[[Category: rna]]
+
-
[[Category: single strand]]
+
-
[[Category: tetraloop]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:54:58 2008''
+

Current revision

CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP

PDB ID 361d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/361d"
Personal tools