This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3b53

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:27, 21 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3b53.jpg|left|200px]]
 
-
{{Structure
+
==Ni,Fe-CODH-320 mV state==
-
|PDB= 3b53 |SIZE=350|CAPTION= <scene name='initialview01'>3b53</scene>, resolution 1.500&Aring;
+
<StructureSection load='3b53' size='340' side='right'caption='[[3b53]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene> and <scene name='pdbligand=B51:NICKEL/IRON/SULFUR CLUSTER'>B51</scene>
+
<table><tr><td colspan='2'>[[3b53]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans_Z-2901 Carboxydothermus hydrogenoformans Z-2901]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B53 FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Carbon-monoxide_dehydrogenase_(acceptor) Carbon-monoxide dehydrogenase (acceptor)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.99.2 1.2.99.2]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= cooS2, cooSII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=129958 Carboxydothermus hydrogenoformans])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=WCC:FE(3)-NI(1)-S(4)+CLUSTER'>WCC</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b53 OCA], [https://pdbe.org/3b53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b53 RCSB], [https://www.ebi.ac.uk/pdbsum/3b53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b53 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/COOS2_CARHZ COOS2_CARHZ] CODH oxidizes carbon monoxide coupled, via CooF, to the reduction of a hydrogen cation by a hydrogenase (possibly CooH) (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b5/3b53_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b53 ConSurf].
 +
<div style="clear:both"></div>
-
'''Ni,Fe-CODH-320 mV state'''
+
==See Also==
-
 
+
*[[Carbon monoxide dehydrogenase 3D structures|Carbon monoxide dehydrogenase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3B53 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans Carboxydothermus hydrogenoformans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B53 OCA].
+
[[Category: Carboxydothermus hydrogenoformans Z-2901]]
-
[[Category: Carbon-monoxide dehydrogenase (acceptor)]]
+
[[Category: Large Structures]]
-
[[Category: Carboxydothermus hydrogenoformans]]
+
[[Category: Dobbek H]]
-
[[Category: Single protein]]
+
[[Category: Jeoung JH]]
-
[[Category: Dobbek, H.]]
+
-
[[Category: Jeoung, J H.]]
+
-
[[Category: B51]]
+
-
[[Category: FE2]]
+
-
[[Category: FES]]
+
-
[[Category: SF4]]
+
-
[[Category: 4fe-4]]
+
-
[[Category: cluster c]]
+
-
[[Category: cytoplasm]]
+
-
[[Category: iron]]
+
-
[[Category: iron-sulfur]]
+
-
[[Category: membrane]]
+
-
[[Category: metal-binding]]
+
-
[[Category: nickel]]
+
-
[[Category: oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:56:10 2008''
+

Current revision

Ni,Fe-CODH-320 mV state

PDB ID 3b53

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3b53"
Personal tools