4z35
From Proteopedia
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==Crystal Structure of Human Lysophosphatidic Acid Receptor 1 in complex with ONO-9910539== | ==Crystal Structure of Human Lysophosphatidic Acid Receptor 1 in complex with ONO-9910539== | ||
- | <StructureSection load='4z35' size='340' side='right' caption='[[4z35]], [[Resolution|resolution]] 2.90Å' scene=''> | + | <StructureSection load='4z35' size='340' side='right'caption='[[4z35]], [[Resolution|resolution]] 2.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[4z35]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z35 OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[4z35]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z35 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Z35 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1WV:(2S)-2,3-DIHYDROXYPROPYL+(7Z)-TETRADEC-7-ENOATE'>1WV</scene>, <scene name='pdbligand=ON9:3-{1-[(2S,3S)-3-(4-ACETYL-3,5-DIMETHOXYPHENYL)-2-(2,3-DIHYDRO-1H-INDEN-2-YLMETHYL)-3-HYDROXYPROPYL]-4-(METHOXYCARBONYL)-1H-PYRROL-3-YL}PROPANOIC+ACID'>ON9</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1WV:(2S)-2,3-DIHYDROXYPROPYL+(7Z)-TETRADEC-7-ENOATE'>1WV</scene>, <scene name='pdbligand=ON9:3-{1-[(2S,3S)-3-(4-ACETYL-3,5-DIMETHOXYPHENYL)-2-(2,3-DIHYDRO-1H-INDEN-2-YLMETHYL)-3-HYDROXYPROPYL]-4-(METHOXYCARBONYL)-1H-PYRROL-3-YL}PROPANOIC+ACID'>ON9</scene></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4z35 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z35 OCA], [https://pdbe.org/4z35 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4z35 RCSB], [https://www.ebi.ac.uk/pdbsum/4z35 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4z35 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [[ | + | [https://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX] Electron-transport protein of unknown function.[https://www.uniprot.org/uniprot/LPAR1_HUMAN LPAR1_HUMAN] Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities. Seems to be coupled to the G(i)/G(o), G(12)/G(13), and G(q) families of heteromeric G proteins. Stimulates phospholipase C (PLC) activity in a manner that is dependent on RALA activation.<ref>PMID:19306925</ref> |
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Lipid biology continues to emerge as an area of significant therapeutic interest, particularly as the result of an enhanced understanding of the wealth of signaling molecules with diverse physiological properties. This growth in knowledge is epitomized by lysophosphatidic acid (LPA), which functions through interactions with at least six cognate G protein-coupled receptors. Herein, we present three crystal structures of LPA1 in complex with antagonist tool compounds selected and designed through structural and stability analyses. Structural analysis combined with molecular dynamics identified a basis for ligand access to the LPA1 binding pocket from the extracellular space contrasting with the proposed access for the sphingosine 1-phosphate receptor. Characteristics of the LPA1 binding pocket raise the possibility of promiscuous ligand recognition of phosphorylated endocannabinoids. Cell-based assays confirmed this hypothesis, linking the distinct receptor systems through metabolically related ligands with potential functional and therapeutic implications for treatment of disease. | ||
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+ | Crystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1.,Chrencik JE, Roth CB, Terakado M, Kurata H, Omi R, Kihara Y, Warshaviak D, Nakade S, Asmar-Rovira G, Mileni M, Mizuno H, Griffith MT, Rodgers C, Han GW, Velasquez J, Chun J, Stevens RC, Hanson MA Cell. 2015 Jun 18;161(7):1633-43. doi: 10.1016/j.cell.2015.06.002. PMID:26091040<ref>PMID:26091040</ref> | ||
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+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 4z35" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Lysophosphatidic acid receptor|Lysophosphatidic acid receptor]] | ||
+ | *[[Sandbox Reserved 1789|Sandbox Reserved 1789]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Asmar-Rovira | + | [[Category: Escherichia coli]] |
- | [[Category: Chrencik | + | [[Category: Homo sapiens]] |
- | [[Category: Chun | + | [[Category: Large Structures]] |
- | + | [[Category: Asmar-Rovira G]] | |
- | [[Category: Griffith | + | [[Category: Chrencik JE]] |
- | [[Category: Han | + | [[Category: Chun J]] |
- | [[Category: Hanson | + | [[Category: Griffith MT]] |
- | [[Category: Kihara | + | [[Category: Han GW]] |
- | [[Category: Kurata | + | [[Category: Hanson MA]] |
- | [[Category: Mileni | + | [[Category: Kihara Y]] |
- | [[Category: Mizuno | + | [[Category: Kurata H]] |
- | [[Category: Nakade | + | [[Category: Mileni M]] |
- | [[Category: Omi | + | [[Category: Mizuno H]] |
- | [[Category: Rodgers | + | [[Category: Nakade S]] |
- | [[Category: Roth | + | [[Category: Omi R]] |
- | [[Category: Stevens | + | [[Category: Rodgers C]] |
- | [[Category: Terakado | + | [[Category: Roth CB]] |
- | [[Category: Velasquez | + | [[Category: Stevens RC]] |
- | [[Category: Warshaviak | + | [[Category: Terakado M]] |
- | + | [[Category: Velasquez J]] | |
- | + | [[Category: Warshaviak D]] | |
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Current revision
Crystal Structure of Human Lysophosphatidic Acid Receptor 1 in complex with ONO-9910539
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Categories: Escherichia coli | Homo sapiens | Large Structures | Asmar-Rovira G | Chrencik JE | Chun J | Griffith MT | Han GW | Hanson MA | Kihara Y | Kurata H | Mileni M | Mizuno H | Nakade S | Omi R | Rodgers C | Roth CB | Stevens RC | Terakado M | Velasquez J | Warshaviak D