This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bdu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:31, 5 January 2022) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bdu.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of protein Q6D8G1 at the resolution 1.9 A. Northeast Structural Genomics Consortium target EwR22A.==
-
|PDB= 3bdu |SIZE=350|CAPTION= <scene name='initialview01'>3bdu</scene>, resolution 1.90&Aring;
+
<StructureSection load='3bdu' size='340' side='right'caption='[[3bdu]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[3bdu]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Erwinia_carotovora_subsp._atroseptica Erwinia carotovora subsp. atroseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDU FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= ECA1013 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=218491 Erwinia carotovora subsp. atroseptica SCRI1043])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ECA1013 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=218491 Erwinia carotovora subsp. atroseptica])</td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdu OCA], [https://pdbe.org/3bdu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdu RCSB], [https://www.ebi.ac.uk/pdbsum/3bdu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdu ProSAT], [https://www.topsan.org/Proteins/NESGC/3bdu TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of protein Q6D8G1 at the resolution 1.9 A. Northeast Structural Genomics Consortium target EwR22A.'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3BDU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Erwinia_carotovora_subsp._atroseptica_scri1043 Erwinia carotovora subsp. atroseptica scri1043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDU OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdu_consurf.spt"</scriptWhenChecked>
-
[[Category: Erwinia carotovora subsp. atroseptica scri1043]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Acton, T B.]]
+
</jmolCheckbox>
-
[[Category: Baran, M C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bdu ConSurf].
-
[[Category: Cunningham, K.]]
+
<div style="clear:both"></div>
-
[[Category: Fang, Y.]]
+
__TOC__
-
[[Category: Hunt, J F.]]
+
</StructureSection>
-
[[Category: Kuzin, A P.]]
+
[[Category: Erwinia carotovora subsp. atroseptica]]
-
[[Category: Liu, J.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Acton, T B]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Baran, M C]]
-
[[Category: Owens, L.]]
+
[[Category: Cunningham, K]]
-
[[Category: Rost, B.]]
+
[[Category: Fang, Y]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Hunt, J F]]
-
[[Category: Su, M.]]
+
[[Category: Kuzin, A P]]
-
[[Category: Tong, L.]]
+
[[Category: Liu, J]]
-
[[Category: Wang, D.]]
+
[[Category: Montelione, G T]]
-
[[Category: Xiao, R.]]
+
[[Category: Structural genomic]]
-
[[Category: lipoprotein]]
+
[[Category: Owens, L]]
-
[[Category: nesg]]
+
[[Category: Rost, B]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Seetharaman, J]]
-
[[Category: protein structure initiative]]
+
[[Category: Su, M]]
-
[[Category: psi-2]]
+
[[Category: Tong, L]]
-
[[Category: q6d8g1]]
+
[[Category: Wang, D]]
-
[[Category: structural genomic]]
+
[[Category: Xiao, R]]
-
[[Category: x_ray]]
+
[[Category: Lipoprotein]]
-
 
+
[[Category: Nesg]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:58:06 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Q6d8g1]]
 +
[[Category: X_ray]]

Current revision

Crystal structure of protein Q6D8G1 at the resolution 1.9 A. Northeast Structural Genomics Consortium target EwR22A.

PDB ID 3bdu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bdu"
Personal tools