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3bio

From Proteopedia

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[[Image:3bio.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of oxidoreductase (Gfo/Idh/MocA family member) from Porphyromonas gingivalis W83==
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|PDB= 3bio |SIZE=350|CAPTION= <scene name='initialview01'>3bio</scene>, resolution 1.800&Aring;
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<StructureSection load='3bio' size='340' side='right'caption='[[3bio]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
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<table><tr><td colspan='2'>[[3bio]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BIO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BIO FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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|GENE= PG_0806 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 Porphyromonas gingivalis W83])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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}}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PG_0806 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bio FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bio OCA], [https://pdbe.org/3bio PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bio RCSB], [https://www.ebi.ac.uk/pdbsum/3bio PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bio ProSAT], [https://www.topsan.org/Proteins/MCSG/3bio TOPSAN]</span></td></tr>
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'''Crystal structure of oxidoreductase (Gfo/Idh/MocA family member) from Porphyromonas gingivalis W83'''
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==About this Structure==
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Check<jmol>
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3BIO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BIO OCA].
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<jmolCheckbox>
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[[Category: Porphyromonas gingivalis w83]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/3bio_consurf.spt"</scriptWhenChecked>
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[[Category: Single protein]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Joachimiak, A.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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</jmolCheckbox>
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[[Category: Moy, S.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bio ConSurf].
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[[Category: Mulligan, R.]]
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<div style="clear:both"></div>
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[[Category: Nocek, B.]]
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__TOC__
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[[Category: ACT]]
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</StructureSection>
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[[Category: EPE]]
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[[Category: Large Structures]]
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[[Category: GOL]]
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[[Category: Porgi]]
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[[Category: gfo/idh/moca family]]
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[[Category: Joachimiak, A]]
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[[Category: mcsg]]
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[[Category: Structural genomic]]
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[[Category: midwest center for structural genomic]]
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[[Category: Moy, S]]
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[[Category: oxidoreductase]]
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[[Category: Mulligan, R]]
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[[Category: protein structure initiative]]
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[[Category: Nocek, B]]
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[[Category: psi-2]]
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[[Category: Gfo/idh/moca family]]
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[[Category: structural genomic]]
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[[Category: Mcsg]]
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[[Category: Oxidoreductase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:59:16 2008''
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[[Category: PSI, Protein structure initiative]]

Current revision

Crystal structure of oxidoreductase (Gfo/Idh/MocA family member) from Porphyromonas gingivalis W83

PDB ID 3bio

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OCA

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