This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5bud

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5bud" [edit=sysop:move=sysop])
Current revision (12:18, 6 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5bud is ON HOLD
+
==Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+==
-
 
+
<StructureSection load='5bud' size='340' side='right'caption='[[5bud]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-
Authors: Wang, V.Y., Tong, L.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[5bud]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Candida_albicans Candida albicans] and [https://en.wikipedia.org/wiki/Candida_albicans_SC5314 Candida albicans SC5314]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BUD FirstGlance]. <br>
-
Description: Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
[[Category: Tong, L]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bud OCA], [https://pdbe.org/5bud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bud RCSB], [https://www.ebi.ac.uk/pdbsum/5bud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bud ProSAT]</span></td></tr>
-
[[Category: Wang, V.Y]]
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DXO_CANAL DXO_CANAL] Ribonuclease that specifically degrades pre-mRNAs with a defective 5' end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5' end cap mRNAs such as unmethylated 5' end-capped RNA to release GpppN and 5' end monophosphate RNA. Also possesses RNA 5'-pyrophosphohydrolase activity by hydrolyzing the 5' end triphosphate to release pyrophosphates (By similarity).
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Candida albicans]]
 +
[[Category: Candida albicans SC5314]]
 +
[[Category: Large Structures]]
 +
[[Category: Tong L]]
 +
[[Category: Wang VY]]

Current revision

Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+

PDB ID 5bud

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools