3bjv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:47, 1 November 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bjv.jpg|left|200px]]
 
-
{{Structure
+
==The Crystal Structure of a putative PTS IIA(PtxA) from Streptococcus mutans==
-
|PDB= 3bjv |SIZE=350|CAPTION= <scene name='initialview01'>3bjv</scene>, resolution 2.400&Aring;
+
<StructureSection load='3bjv' size='340' side='right'caption='[[3bjv]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[3bjv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans_UA159 Streptococcus mutans UA159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BJV FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Protein-N(pi)-phosphohistidine--sugar_phosphotransferase Protein-N(pi)-phosphohistidine--sugar phosphotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.69 2.7.1.69]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
|GENE= ptxA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1309 Streptococcus mutans])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bjv OCA], [https://pdbe.org/3bjv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bjv RCSB], [https://www.ebi.ac.uk/pdbsum/3bjv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bjv ProSAT]</span></td></tr>
-
}}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q93DA9_STRMG Q93DA9_STRMG]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bj/3bjv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bjv ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Streptococcus mutans is the primary etiological agent of dental caries in man and other mammalian organisms. This bacterium metabolizes carbohydrates actively and thrives under anaerobic conditions by fermenting l-ascorbate (Asc) via the sga operon, which includes SgaT, PtxB, and PtxA. These three proteins are members of the Asc family of enzyme II (EII) complexes of the bacterial phosphotransferase system. Here, we report the crystal structure of PtxB, solved by single-wavelength anomalous dispersion phasing, and that of PtxA, solved by molecular replacement, from S. mutans. PtxB provides the first crystal structure of an EIIB from the Asc family, composed of a central beta sheet of parallel strands flanked by alpha helices on both sides. The structure of PtxB is similar to the structures of IIB(Mtl) (IIB subunit of mannitol PTS) and IIB(Cel) (IIB subunit of cellobiose) in Escherichia coli despite the low sequence identity. PtxA adopts a globular alpha/beta sandwich structure. The phosphorylation-site His68 is situated between beta2 and beta3, within a hydrophobic pocket. We found that the hydrogen bond on N(delta1) of the active-site histidine is a common means of ensuring that phosphate is on the correct N(varepsilon2) site in many EIIA families. Finally, a model of the PtxB-PtxA complex was constructed, and a PtxA-phospho-PtxB state is proposed. Analyses of the two structures shed light on the catalytic mechanism of the phosphotransferase system.
-
'''The Crystal Structure of a putative PTS IIA(PtxA) from Streptococcus mutans'''
+
Crystal structures of phosphotransferase system enzymes PtxB (IIB(Asc)) and PtxA (IIA(Asc)) from Streptococcus mutans.,Lei J, Li LF, Su XD J Mol Biol. 2009 Feb 20;386(2):465-75. Epub 2008 Dec 25. PMID:19135450<ref>PMID:19135450</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
==About this Structure==
+
</div>
-
3BJV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BJV OCA].
+
<div class="pdbe-citations 3bjv" style="background-color:#fffaf0;"></div>
-
[[Category: Protein-N(pi)-phosphohistidine--sugar phosphotransferase]]
+
== References ==
-
[[Category: Single protein]]
+
<references/>
-
[[Category: Streptococcus mutans]]
+
__TOC__
-
[[Category: Lei, J.]]
+
</StructureSection>
-
[[Category: Liang, Y H.]]
+
[[Category: Large Structures]]
-
[[Category: Su, X D.]]
+
[[Category: Streptococcus mutans UA159]]
-
[[Category: alpha/beta three layer sandwich]]
+
[[Category: Lei J]]
-
[[Category: transferase]]
+
[[Category: Liang YH]]
-
 
+
[[Category: Su XD]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:59:35 2008''
+

Current revision

The Crystal Structure of a putative PTS IIA(PtxA) from Streptococcus mutans

PDB ID 3bjv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools