5bv9
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5bv9 is ON HOLD Authors: Alahuhta, P.M., Lunin, V.V. Description: The Structure of Bacillus pumilus GH48 in complex with cellobiose [[Category: Unr...) |
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| - | '''Unreleased structure''' | ||
| - | The | + | ==The Structure of Bacillus pumilus GH48 in complex with cellobiose== |
| + | <StructureSection load='5bv9' size='340' side='right'caption='[[5bv9]], [[Resolution|resolution]] 1.93Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5bv9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_pumilus_SAFR-032 Bacillus pumilus SAFR-032]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BV9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BV9 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=PRD_900005:beta-cellobiose'>PRD_900005</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bv9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bv9 OCA], [https://pdbe.org/5bv9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bv9 RCSB], [https://www.ebi.ac.uk/pdbsum/5bv9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bv9 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A8FDC4_BACP2 A8FDC4_BACP2] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Family 48 cellobiohydrolases are some of the most abundant glycoside hydrolases in nature. They are able to degrade cellulosic biomass and therefore serve as good enzyme candidates for biofuel production. Family 48 cellulases hydrolyze cellulose chains via a processive mechanism, and produce end products composed primarily of cellobiose as well as other cellooligomers (dp </= 4). The challenge of utilizing cellulases in biofuel production lies in their extremely slow turnover rate. A factor contributing to the low enzyme activity is suggested to be product binding to enzyme and the resulting performance inhibition. In this study, we quantitatively evaluated the product inhibitory effect of four family 48 glycoside hydrolases using molecular dynamics simulations and product expulsion free-energy calculations. We also suggested a series of single mutants of the four family 48 glycoside hydrolases with theoretically reduced level of product inhibition. The theoretical calculations provide a guide for future experimental studies designed to produce mutant cellulases with enhanced activity. | ||
| - | + | Strategies to reduce end-product inhibition in family 48 glycoside hydrolases.,Chen M, Bu L, Alahuhta M, Brunecky R, Xu Q, Lunin VV, Brady JW, Crowley MF, Himmel ME, Bomble YJ Proteins. 2016 Mar;84(3):295-304. doi: 10.1002/prot.24965. Epub 2016 Feb 1. PMID:26572060<ref>PMID:26572060</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Alahuhta | + | <div class="pdbe-citations 5bv9" style="background-color:#fffaf0;"></div> |
| - | [[Category: Lunin | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bacillus pumilus SAFR-032]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Alahuhta PM]] | ||
| + | [[Category: Lunin VV]] | ||
Current revision
The Structure of Bacillus pumilus GH48 in complex with cellobiose
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