4ph2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:17, 27 September 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==mature N-terminal domain of capsid protein from bovine leukemia virus==
==mature N-terminal domain of capsid protein from bovine leukemia virus==
-
<StructureSection load='4ph2' size='340' side='right' caption='[[4ph2]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
+
<StructureSection load='4ph2' size='340' side='right'caption='[[4ph2]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bovine_leukemia_virus Bovine leukemia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.44&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [https://pdbe.org/4ph2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [https://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/L0PI28_BLV L0PI28_BLV]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Retroviruses depend upon self-assembly of their capsid proteins (core particle) to yield infectious mature virions. Despite the essential role of the retroviral core, its high polymorphism has hindered high-resolution structural analyses. Here, we report the x-ray structure of the native capsid (CA) protein from bovine leukemia virus. CA is organized as hexamers that deviate significantly from 6-fold symmetry, yet adjust to make two-dimensional pseudo-hexagonal arrays that mimic mature retroviral cores. Intra- and interhexameric quasi-equivalent contacts are uncovered, with flexible trimeric lateral contacts among hexamers, yet preserving very similar dimeric interfaces making the lattice. The conformation of each capsid subunit in the hexamer is therefore dictated by long-range interactions, revealing how the hexamers can also assemble into closed core particles, a relevant feature of retrovirus biology.
 +
 +
Conformational plasticity of a native retroviral capsid revealed by x-ray crystallography.,Obal G, Trajtenberg F, Carrion F, Tome L, Larrieux N, Zhang X, Pritsch O, Buschiazzo A Science. 2015 Jun 4. pii: aaa5182. PMID:26044299<ref>PMID:26044299</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4ph2" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Buschiazzo, A]]
+
[[Category: Bovine leukemia virus]]
-
[[Category: Obal, G]]
+
[[Category: Large Structures]]
-
[[Category: Pritsch, O]]
+
[[Category: Buschiazzo A]]
-
[[Category: Trajtenberg, F]]
+
[[Category: Obal G]]
-
[[Category: All alpha]]
+
[[Category: Pritsch O]]
-
[[Category: Mature retroviral capsid ntd with beta-hairpin]]
+
[[Category: Trajtenberg F]]
-
[[Category: Viral protein]]
+

Current revision

mature N-terminal domain of capsid protein from bovine leukemia virus

PDB ID 4ph2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools