4zpw

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'''Unreleased structure'''
 
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The entry 4zpw is ON HOLD until Paper Publication
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==Structure of unbound MERS-CoV spike receptor-binding domain (England1 strain).==
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<StructureSection load='4zpw' size='340' side='right'caption='[[4zpw]], [[Resolution|resolution]] 3.02&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4zpw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Betacoronavirus_England_1 Betacoronavirus England 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZPW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZPW FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zpw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zpw OCA], [https://pdbe.org/4zpw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zpw RCSB], [https://www.ebi.ac.uk/pdbsum/4zpw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zpw ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SPIKE_MERS1 SPIKE_MERS1] Attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Interacts with host DPP4 to mediate virla entry.[HAMAP-Rule:MF_04099]<ref>PMID:23486063</ref> Mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The emergence of Middle East respiratory syndrome coronavirus (MERS-CoV) as a cause of severe respiratory disease highlights the need for effective approaches to CoV vaccine development. Efforts focused solely on the receptor-binding domain (RBD) of the viral Spike (S) glycoprotein may not optimize neutralizing antibody (NAb) responses. Here we show that immunogens based on full-length S DNA and S1 subunit protein elicit robust serum-neutralizing activity against several MERS-CoV strains in mice and non-human primates. Serological analysis and isolation of murine monoclonal antibodies revealed that immunization elicits NAbs to RBD and, non-RBD portions of S1 and S2 subunit. Multiple neutralization mechanisms were demonstrated by solving the atomic structure of a NAb-RBD complex, through sequencing of neutralization escape viruses and by constructing MERS-CoV S variants for serological assays. Immunization of rhesus macaques confers protection against MERS-CoV-induced radiographic pneumonia, as assessed using computerized tomography, supporting this strategy as a promising approach for MERS-CoV vaccine development.
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Authors: Joyce, M.G., Mascola, J.R., Graham, B.S., Kwong, P.D.
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Evaluation of candidate vaccine approaches for MERS-CoV.,Wang L, Shi W, Joyce MG, Modjarrad K, Zhang Y, Leung K, Lees CR, Zhou T, Yassine HM, Kanekiyo M, Yang ZY, Chen X, Becker MM, Freeman M, Vogel L, Johnson JC, Olinger G, Todd JP, Bagci U, Solomon J, Mollura DJ, Hensley L, Jahrling P, Denison MR, Rao SS, Subbarao K, Kwong PD, Mascola JR, Kong WP, Graham BS Nat Commun. 2015 Jul 28;6:7712. doi: 10.1038/ncomms8712. PMID:26218507<ref>PMID:26218507</ref>
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Description: Structure of unbound MERS-CoV spike receptor-binding domain (England1 strain).
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Joyce, M.G]]
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<div class="pdbe-citations 4zpw" style="background-color:#fffaf0;"></div>
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[[Category: Graham, B.S]]
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[[Category: Kwong, P.D]]
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==See Also==
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[[Category: Mascola, J.R]]
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*[[Sandbox 3001|Sandbox 3001]]
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*[[Spike protein|Spike protein]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Betacoronavirus England 1]]
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[[Category: Large Structures]]
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[[Category: Graham BS]]
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[[Category: Joyce MG]]
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[[Category: Kwong PD]]
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[[Category: Mascola JR]]

Current revision

Structure of unbound MERS-CoV spike receptor-binding domain (England1 strain).

PDB ID 4zpw

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