3c5o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:44, 27 January 2022) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c5o.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the conserved protein of unknown function RPA1785 from Rhodopseudomonas palustris==
-
|PDB= 3c5o |SIZE=350|CAPTION= <scene name='initialview01'>3c5o</scene>, resolution 2.20&Aring;
+
<StructureSection load='3c5o' size='340' side='right'caption='[[3c5o]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Gol+Binding+Site+For+Residue+D+156'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[3c5o]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhopa Rhopa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5O FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
|GENE= RPA1785 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 Rhodopseudomonas palustris CGA009])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RPA1785 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5o OCA], [https://pdbe.org/3c5o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5o RCSB], [https://www.ebi.ac.uk/pdbsum/3c5o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5o ProSAT], [https://www.topsan.org/Proteins/MCSG/3c5o TOPSAN]</span></td></tr>
-
'''Crystal structure of the conserved protein of unknown function RPA1785 from Rhodopseudomonas palustris'''
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3C5O is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_cga009 Rhodopseudomonas palustris cga009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5O OCA].
+
<jmolCheckbox>
-
[[Category: Rhodopseudomonas palustris cga009]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5o_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Evdokimova, E.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c5o ConSurf].
-
[[Category: Kim, Y.]]
+
<div style="clear:both"></div>
-
[[Category: Kudritska, M.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Savchenko, A.]]
+
[[Category: Large Structures]]
-
[[Category: GOL]]
+
[[Category: Rhopa]]
-
[[Category: beta-barrel]]
+
[[Category: Edwards, A M]]
-
[[Category: mcsg]]
+
[[Category: Evdokimova, E]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Joachimiak, A]]
-
[[Category: protein structure initiative]]
+
[[Category: Kim, Y]]
-
[[Category: psi-2]]
+
[[Category: Kudritska, M]]
-
[[Category: structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: unknown function]]
+
[[Category: Savchenko, A]]
-
 
+
[[Category: Beta-barrel]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:02:45 2008''
+
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of the conserved protein of unknown function RPA1785 from Rhodopseudomonas palustris

PDB ID 3c5o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools