This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c9f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:33, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c9f.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of 5'-nucleotidase from Candida albicans SC5314==
-
|PDB= 3c9f |SIZE=350|CAPTION= <scene name='initialview01'>3c9f</scene>, resolution 1.90&Aring;
+
<StructureSection load='3c9f' size='340' side='right'caption='[[3c9f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+A+601'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Residue+B+601'>AC2</scene>, <scene name='pdbsite=AC3:Na+Binding+Site+For+Residue+B+603'>AC3</scene>, <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+B+604'>AC4</scene>, <scene name='pdbsite=AC5:Na+Binding+Site+For+Residue+A+605'>AC5</scene>, <scene name='pdbsite=AC6:Na+Binding+Site+For+Residue+B+606'>AC6</scene>, <scene name='pdbsite=AC7:Fmt+Binding+Site+For+Residue+B+607'>AC7</scene> and <scene name='pdbsite=AC8:Fmt+Binding+Site+For+Residue+A+607'>AC8</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> and <scene name='pdbligand=FMT:FORMIC ACID'>FMT</scene>
+
<table><tr><td colspan='2'>[[3c9f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Candida_albicans_SC5314 Candida albicans SC5314]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C9F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C9F FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
|GENE= USHA, CaO19.12802, CaO19.5342 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=237561 Candida albicans SC5314])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c9f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c9f OCA], [https://pdbe.org/3c9f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c9f RCSB], [https://www.ebi.ac.uk/pdbsum/3c9f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c9f ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3c9f TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of 5'-nucleotidase from Candida albicans SC5314'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5A5Q7_CANAL Q5A5Q7_CANAL]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3C9F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Candida_albicans_sc5314 Candida albicans sc5314]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C9F OCA].
+
Check<jmol>
-
[[Category: Candida albicans sc5314]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c9/3c9f_consurf.spt"</scriptWhenChecked>
-
[[Category: Almo, S C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Bain, K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Burley, S K.]]
+
</jmolCheckbox>
-
[[Category: Eberle, M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c9f ConSurf].
-
[[Category: Gilmore, M.]]
+
<div style="clear:both"></div>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
__TOC__
-
[[Category: Patskovsky, Y.]]
+
</StructureSection>
-
[[Category: Romero, R.]]
+
[[Category: Candida albicans SC5314]]
-
[[Category: Sauder, J M.]]
+
[[Category: Large Structures]]
-
[[Category: Smith, D.]]
+
[[Category: Almo SC]]
-
[[Category: Wasserman, S R.]]
+
[[Category: Bain K]]
-
[[Category: FMT]]
+
[[Category: Burley SK]]
-
[[Category: NA]]
+
[[Category: Eberle M]]
-
[[Category: ZN]]
+
[[Category: Gilmore M]]
-
[[Category: 2s']]
+
[[Category: Patskovsky Y]]
-
[[Category: 3'-cyclic phosphodiesterase]]
+
[[Category: Romero R]]
-
[[Category: 5'-nucleotidase]]
+
[[Category: Sauder JM]]
-
[[Category: hydrolase]]
+
[[Category: Smith D]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Wasserman SR]]
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:03:07 2008''
+

Current revision

Crystal structure of 5'-nucleotidase from Candida albicans SC5314

PDB ID 3c9f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools