3cdl
From Proteopedia
(Difference between revisions)
												
			
			 (New page: 200px   {{Structure |PDB= 3cdl |SIZE=350|CAPTION= <scene name='initialview01'>3cdl</scene>, resolution 2.36Å |SITE=  |LIGAND=  |ACTIVITY=  |GENE= aefR, PSPTO3...)  | 
				|||
| (10 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3cdl.jpg|left|200px]]  | ||
| - | + | ==Crystal structure of a TetR family transcriptional regulator from Pseudomonas syringae pv. tomato str. DC3000==  | |
| - | + | <StructureSection load='3cdl' size='340' side='right'caption='[[3cdl]], [[Resolution|resolution]] 2.36Å' scene=''>  | |
| - | + | == Structural highlights ==  | |
| - | + | <table><tr><td colspan='2'>[[3cdl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Psesm Psesm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDL FirstGlance]. <br>  | |
| - | |  | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>  | 
| - | |  | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aefR, PSPTO3549 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223283 PSESM])</td></tr>  | 
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdl OCA], [https://pdbe.org/3cdl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdl RCSB], [https://www.ebi.ac.uk/pdbsum/3cdl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdl ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdl TOPSAN]</span></td></tr>  | |
| + | </table>  | ||
| + | == Evolutionary Conservation ==  | ||
| + | [[Image:Consurf_key_small.gif|200px|right]]  | ||
| + | Check<jmol>  | ||
| + |   <jmolCheckbox>  | ||
| + |     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdl_consurf.spt"</scriptWhenChecked>  | ||
| + |     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>  | ||
| + |     <text>to colour the structure by Evolutionary Conservation</text>  | ||
| + |   </jmolCheckbox>  | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdl ConSurf].  | ||
| + | <div style="clear:both"></div>  | ||
| - | + | ==See Also==  | |
| - | + | *[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]  | |
| - | + | *[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]  | |
| - | ==  | + | __TOC__  | 
| - | + | </StructureSection>  | |
| + | [[Category: Large Structures]]  | ||
| + | [[Category: Psesm]]  | ||
| + | [[Category: Bigelow, L]]  | ||
| + | [[Category: Gu, M]]  | ||
| + | [[Category: Joachimiak, A]]  | ||
| + | [[Category: Structural genomic]]  | ||
| + | [[Category: Tan, K]]  | ||
| + | [[Category: Apc88582]]  | ||
| + | [[Category: Dna-binding]]  | ||
| + | [[Category: Mcsg]]  | ||
| + | [[Category: PSI, Protein structure initiative]]  | ||
[[Category: Pseudomonas syringae pv. tomato str. dc3000]]  | [[Category: Pseudomonas syringae pv. tomato str. dc3000]]  | ||
| - | [[Category:   | + | [[Category: Tetr]]  | 
| - | [[Category:   | + | [[Category: Transcription]]  | 
| - | [[Category:   | + | [[Category: Transcription regulation]]  | 
| - | + | [[Category: Transcription regulator]]  | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | [[Category:   | + | |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a TetR family transcriptional regulator from Pseudomonas syringae pv. tomato str. DC3000
  | |||||||||||

