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User:Jaime Prilusky/Evolutionary Trace

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< User:Jaime Prilusky(Difference between revisions)
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(New page: ==Evolutionary Trace== <StructureSection load='1a09' size='340' side='right' caption='Caption for this structure' scene=''> This is a test page to display evolutionary coloring generated b...)
Current revision (12:14, 28 June 2015) (edit) (undo)
 
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==Evolutionary Trace==
==Evolutionary Trace==
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<StructureSection load='1a09' size='340' side='right' caption='Caption for this structure' scene=''>
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This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.
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This is a test page to display evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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<table ><tr><td colspan='3'>
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<jmol>
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<jmolCheckbox>
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<target>jmol_1a09</target>
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<scriptWhenChecked>set syncMouse on;set syncScript on;sync * on;</scriptWhenChecked>
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<scriptWhenUnchecked>sync * off;</scriptWhenUnchecked>
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<text>Synchronize the 3 models for rotation with your mouse.</text>
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</jmolCheckbox>
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</jmol>
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</td></tr><tr>
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<td>
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<jmol><jmolApplet>
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<title>1a09</title>
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<name>jmol_1a09</name>
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<color>white</color><size>300</size>
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<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>
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<pspeed>8</pspeed>
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<caption>Default coloring for [[1a09]]</caption>
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<controls>spin popup</controls>
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</jmolApplet>
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</jmol>
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</td>
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</StructureSection>
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<td>
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== References ==
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<jmol><jmolApplet>
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<references/>
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<title>Consurf 1a09</title>
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<name>jmol_consurf</name>
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<color>white</color><size>300</size>
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<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script>
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<pspeed>8</pspeed>
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<caption>Consurf coloring</caption>
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<controls>spin popup</controls>
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</jmolApplet>
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</jmol>
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</td>
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<td>
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<jmol><jmolApplet>
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<title>ET 1a09</title>
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<name>jmol_ET</name>
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<color>white</color><size>300</size>
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<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script>
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<pspeed>8</pspeed>
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<caption>Evolutionary Trace coloring</caption>
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<controls>spin popup</controls>0
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</jmolApplet></jmol>
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</td></tr>
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<tr valign='top'>
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<td>
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</td>
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<td>[[Image:Consurf key small.gif|300px]]</td>
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<td>[[Image:Scale pyetv.png|300px]]</td></tr>
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</table>

Current revision

Evolutionary Trace

This is a test page to test evolutionary coloring generated by the Evolutionary Trace server at Baylor College of Medicine.

1a09

Default coloring for 1a09

Drag the structure with the mouse to rotate

Consurf 1a09

Consurf coloring

Drag the structure with the mouse to rotate

ET 1a09

Evolutionary Trace coloring

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky

Retrieved from "http://52.214.119.220/wiki/index.php/User:Jaime_Prilusky/Evolutionary_Trace"
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