This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Jaime Prilusky/Evolutionary Trace
From Proteopedia
< User:Jaime Prilusky(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Evolutionary Trace== | ==Evolutionary Trace== | ||
| - | This is a test page to | + | This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine. |
| - | <table><tr><td> | + | <table ><tr><td colspan='3'> |
| + | <jmol> | ||
| + | <jmolCheckbox> | ||
| + | <target>jmol_1a09</target> | ||
| + | <scriptWhenChecked>set syncMouse on;set syncScript on;sync * on;</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>sync * off;</scriptWhenUnchecked> | ||
| + | <text>Synchronize the 3 models for rotation with your mouse.</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol> | ||
| + | </td></tr><tr> | ||
| + | <td> | ||
<jmol><jmolApplet> | <jmol><jmolApplet> | ||
<title>1a09</title> | <title>1a09</title> | ||
| + | <name>jmol_1a09</name> | ||
<color>white</color><size>300</size> | <color>white</color><size>300</size> | ||
| - | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;</script> | + | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script> |
<pspeed>8</pspeed> | <pspeed>8</pspeed> | ||
| - | <caption> | + | <caption>Default coloring for [[1a09]]</caption> |
<controls>spin popup</controls> | <controls>spin popup</controls> | ||
</jmolApplet> | </jmolApplet> | ||
</jmol> | </jmol> | ||
| - | </td><td> | + | </td> |
| + | |||
| + | <td> | ||
<jmol><jmolApplet> | <jmol><jmolApplet> | ||
| - | <title>1a09</title> | + | <title>Consurf 1a09</title> |
| + | <name>jmol_consurf</name> | ||
<color>white</color><size>300</size> | <color>white</color><size>300</size> | ||
| - | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;</script> | + | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script> |
<pspeed>8</pspeed> | <pspeed>8</pspeed> | ||
| - | <caption> | + | <caption>Consurf coloring</caption> |
<controls>spin popup</controls> | <controls>spin popup</controls> | ||
| - | </jmolApplet></jmol> | + | </jmolApplet> |
| - | </td | + | </jmol> |
| + | </td> | ||
| - | + | <td> | |
| - | select | + | <jmol><jmolApplet> |
| - | + | <title>ET 1a09</title> | |
| - | < | + | <name>jmol_ET</name> |
| - | < | + | <color>white</color><size>300</size> |
| - | + | <script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script> | |
| - | + | <pspeed>8</pspeed> | |
| - | + | <caption>Evolutionary Trace coloring</caption> | |
| - | </ | + | <controls>spin popup</controls>0 |
| - | + | </jmolApplet></jmol> | |
| - | < | + | </td></tr> |
| - | + | <tr valign='top'> | |
| + | <td> | ||
| + | </td> | ||
| + | <td>[[Image:Consurf key small.gif|300px]]</td> | ||
| + | <td>[[Image:Scale pyetv.png|300px]]</td></tr> | ||
| + | </table> | ||
Current revision
Evolutionary Trace
This is a test page to test evolutionary coloring generated by the Evolutionary Trace server at Baylor College of Medicine.
|
| ||||||||||||||||||||
|
|
| ||||||||||||||||||
 |
 | |||||||||||||||||||
