5cb7
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5cb7 is ON HOLD Authors: Yu, X., Blanchard, H. Description: Category: Unreleased Structures Category: Blanchard, H Category: Yu, X) |
|||
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystallographic structure of human rotavirus K8 VP8* in complex with A-type HBGA== | |
| - | + | <StructureSection load='5cb7' size='340' side='right'caption='[[5cb7]], [[Resolution|resolution]] 1.35Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[5cb7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rotavirus_A_K8/G1 Rotavirus A K8/G1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CB7 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> | |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | [[Category: Blanchard | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cb7 OCA], [https://pdbe.org/5cb7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cb7 RCSB], [https://www.ebi.ac.uk/pdbsum/5cb7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cb7 ProSAT]</span></td></tr> |
| - | [[Category: Yu | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/VP4_ROTHJ VP4_ROTHJ] Spike-forming protein that mediates virion attachment to the host epithelial cell receptors and plays a major role in cell penetration, determination of host range restriction and virulence. Rotavirus entry into the host cell probably involves multiple sequential contacts between the outer capsid proteins VP4 and VP7, and the cell receptors. According to the considered strain, VP4 seems to essentially target sialic acid and/or the integrin heterodimer ITGA2/ITGB1 (By similarity). Outer capsid protein VP5*: forms the spike "foot" and "body". Acts as a membrane permeabilization protein that mediates release of viral particles from endosomal compartments into the cytoplasm. In integrin-dependent strains, VP5* targets the integrin heterodimer ITGA2/ITGB1 for cell attachment (By similarity). VP8* forms the head of the spikes. It is the viral hemagglutinin and an important target of neutralizing antibodies. In sialic acid-dependent strains, VP8* binds to host cell sialic acid, most probably a ganglioside, providing the initial contact (By similarity). | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Rotavirus A K8/G1]] | ||
| + | [[Category: Blanchard H]] | ||
| + | [[Category: Yu X]] | ||
Current revision
Crystallographic structure of human rotavirus K8 VP8* in complex with A-type HBGA
| |||||||||||
