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4xav

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==Crystal structure of olfactomedin domain from gliomedin==
==Crystal structure of olfactomedin domain from gliomedin==
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<StructureSection load='4xav' size='340' side='right' caption='[[4xav]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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<StructureSection load='4xav' size='340' side='right'caption='[[4xav]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4xav]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XAV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XAV FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4xav]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XAV FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.052&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4xat|4xat]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xav OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4xav RCSB], [http://www.ebi.ac.uk/pdbsum/4xav PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xav OCA], [https://pdbe.org/4xav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xav RCSB], [https://www.ebi.ac.uk/pdbsum/4xav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xav ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/GLDN_MOUSE GLDN_MOUSE]] Plays a role in the formation of the nodes of Ranvier along myelinated axons. Probable NRCAM and NFASC/neurofascin ligand which may provide a glial positional clue required for the proper molecular assembly of the nodes of Ranvier (By similarity).
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[https://www.uniprot.org/uniprot/GLDN_MOUSE GLDN_MOUSE] Plays a role in the formation of the nodes of Ranvier along myelinated axons. Probable NRCAM and NFASC/neurofascin ligand which may provide a glial positional clue required for the proper molecular assembly of the nodes of Ranvier (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Olfactomedin (OLF) domains are found within extracellular, multidomain proteins in numerous tissues of multicellular organisms. Even though these proteins have been implicated in human disorders ranging from cancers to attention deficit disorder to glaucoma, little is known about their structure(s) and function(s). Here we biophysically, biochemically, and structurally characterize OLF domains from H. sapiens olfactomedin-1 (npoh-OLF, also called noelin, pancortin, OLFM1, and hOlfA), and M. musculus gliomedin (glio-OLF, also called collomin, collmin, and CRG-L2), and compare them with available structures of myocilin (myoc-OLF) recently reported by us and R. norvegicus glio-OLF and M. musculus latrophilin-3 (lat3-OLF) by others. Although the five-bladed beta-propeller architecture remains unchanged, numerous physicochemical characteristics differ among these OLF domains. First, npoh-OLF and glio-OLF exhibit prominent, yet distinct, positive surface charges and copurify with polynucleotides. Second, whereas npoh-OLF and myoc-OLF exhibit thermal stabilities typical of human proteins near 55 degrees C, and most myoc-OLF variants are destabilized and highly prone to aggregation, glio-OLF is nearly 20 degrees C more stable and significantly more resistant to chemical denaturation. Phylogenetically, glio-OLF is most similar to primitive OLFs, and structurally, glio-OLF is missing distinguishing features seen in OLFs such as the disulfide bond formed by N- and C- terminal cysteines, the sequestered Ca2+ ion within the propeller central hydrophilic cavity, and a key loop-stabilizing cation-pi interaction on the top face of npoh-OLF and myoc-OLF. While deciphering the explicit biological functions, ligands, and binding partners for OLF domains will likely continue to be a challenging long-term experimental pursuit, we used structural insights gained here to generate a new antibody selective for myoc-OLF over npoh-OLF and glio-OLF as a first step in overcoming the impasse in detailed functional characterization of these biomedically important protein domains.
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Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies.,Hill SE, Donegan RK, Nguyen E, Desai TM, Lieberman RL PLoS One. 2015 Jun 29;10(6):e0130888. doi: 10.1371/journal.pone.0130888., eCollection 2015. PMID:26121352<ref>PMID:26121352</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Hill, S E]]
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[[Category: Large Structures]]
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[[Category: Lieberman, R L]]
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[[Category: Mus musculus]]
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[[Category: Nguyen, E]]
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[[Category: Hill SE]]
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[[Category: Bladed propeller]]
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[[Category: Lieberman RL]]
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[[Category: Beta propeller]]
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[[Category: Nguyen E]]
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[[Category: Cell adhesion]]
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[[Category: Olfactomedin]]
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Current revision

Crystal structure of olfactomedin domain from gliomedin

PDB ID 4xav

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