4um3

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==Engineered Ls-AChBP with alpha4-alpha4 interface in complex with NS3920==
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<StructureSection load='4um3' size='340' side='right' caption='[[4um3]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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==Engineered Ls-AChBP with alpha4-alpha4 binding pocket in complex with NS3920==
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<StructureSection load='4um3' size='340' side='right'caption='[[4um3]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4um3]] is a 40 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UM3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UM3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4um3]] is a 40 chain structure with sequence from [https://en.wikipedia.org/wiki/Lymnaea_stagnalis Lymnaea stagnalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UM3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=09R:1-(6-BROMOPYRIDIN-3-YL)-1,4-DIAZEPANE'>09R</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.703&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4um1|4um1]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=09R:1-(6-BROMOPYRIDIN-3-YL)-1,4-DIAZEPANE'>09R</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4um3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4um3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4um3 RCSB], [http://www.ebi.ac.uk/pdbsum/4um3 PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4um3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4um3 OCA], [https://pdbe.org/4um3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4um3 RCSB], [https://www.ebi.ac.uk/pdbsum/4um3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4um3 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/ACHP_LYMST ACHP_LYMST]] Binds to acetylcholine. Modulates neuronal synaptic transmission.
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[https://www.uniprot.org/uniprot/ACHP_LYMST ACHP_LYMST] Binds to acetylcholine. Modulates neuronal synaptic transmission.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Neuronal alpha4beta2 nicotinic acetylcholine receptors are attractive drug targets for psychiatric and neurodegenerative disorders and smoking cessation aids. Recently, a third agonist binding site between two alpha4 subunits in the (alpha4)3(beta2)2 receptor sub-population was discovered. In particular, three residues, H142, Q150, and T152, were demonstrated to be involved in the distinct pharmacology of the alpha4-alpha4 vs. alpha4-beta2 binding sites. To obtain insight into the 3-dimensional structure of the alpha4-alpha4 binding site, a surrogate protein reproducing alpha4-alpha4 binding characteristics was constructed by introduction of three point mutations, R104H, L112Q, and M114T, into the binding pocket of Lymnaea stagnalis acetylcholine binding protein (Ls-AChBP). Co-crystallization with two agonists possessing distinct pharmacological profiles, NS3920 and NS3573, highlights the roles of the three residues in determining binding affinities and functional properties of ligands at the alpha4-alpha4 interface. Confirmed by mutational studies, our structures suggest a unique ligand-specific role of residue H142 on the alpha4 subunit. In the co-crystal structure of the mutated Ls-AChBP with the high efficacy ligand NS3920, the corresponding histidine forms an inter-subunit bridge that reinforces the ligand-mediated interactions between subunits. The structures further reveal that the binding site residues gain different and ligand-dependent interactions that could not be predicted based on wild-type Ls-AChBP structures in complex with the same agonists. The results show that an unprecedented correlation between binding in engineered AChBPs and functional receptors can be obtained and provide new opportunities for structure-based design of drugs targeting specific nAChR interfaces.
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AChBP Engineered to Mimic the alpha4-beta4 Binding Pocket in alpha4beta2 Nicotinic Acetylcholine Receptors Reveals Interface Specific Interactions Important for Binding and Activity.,Shahsavar A, Ahring PK, Olsen JA, Krintel C, Kastrup JS, Balle T, Gajhede M Mol Pharmacol. 2015 Jul 15. pii: mol.115.098061. PMID:26180047<ref>PMID:26180047</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4um3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Balle, T]]
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[[Category: Large Structures]]
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[[Category: Gajhede, M]]
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[[Category: Lymnaea stagnalis]]
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[[Category: Kastrup, J S]]
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[[Category: Balle T]]
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[[Category: Shahsavar, A]]
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[[Category: Gajhede M]]
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[[Category: Cys-loop receptor]]
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[[Category: Kastrup JS]]
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[[Category: Ion channel]]
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[[Category: Shahsavar A]]
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[[Category: Nicotinic acetylcholine receptor]]
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[[Category: Receptor stoichiometry]]
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[[Category: Signaling protein]]
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Current revision

Engineered Ls-AChBP with alpha4-alpha4 binding pocket in complex with NS3920

PDB ID 4um3

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