5a99

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5a99" [edit=sysop:move=sysop])
Current revision (11:36, 6 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5a99 is ON HOLD until Paper Publication
+
==Crystal structure of Operophtera brumata CPV19 polyhedra==
 +
<StructureSection load='5a99' size='340' side='right'caption='[[5a99]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5a99]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Operophtera_brumata_cypovirus_19 Operophtera brumata cypovirus 19]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A99 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A99 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.511&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a99 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a99 OCA], [https://pdbe.org/5a99 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a99 RCSB], [https://www.ebi.ac.uk/pdbsum/5a99 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a99 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q30C66_9REOV Q30C66_9REOV]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Polyhedra represent an ancient system used by a number of insect viruses to protect virions during long periods of environmental exposure. We present high resolution crystal structures of polyhedra for seven previously uncharacterised types of cypoviruses, four using ab initio selenomethionine phasing (two of these required over 100 selenomethionine crystals each). Approximately 80% of residues are structurally equivalent between all polyhedrins (pairwise rmsd 1.5A), whilst pairwise sequence identities, based on structural alignment, are as little as 12%. These structures illustrate the effect of 400million years of evolution on a system where the crystal lattice is the functionally conserved feature in the face of massive sequence variability. The conservation of crystal contacts is maintained across most of the molecular surface, except for a dispensable virus recognition domain. By spreading the contacts over so much of the protein surface the lattice remains robust in the face of many individual changes. Overall these unusual structural constraints seem to have skewed the molecule's evolution so that surface residues are almost as conserved as the internal residues.
-
Authors: Ji, X., Axford, D., Owen, R., Evans, G., Ginn, H.M., Sutton, G., Stuart, D.I.
+
Polyhedra structures and the evolution of the insect viruses.,Ji X, Axford D, Owen R, Evans G, Ginn HM, Sutton G, Stuart DI J Struct Biol. 2015 Aug 18. pii: S1047-8477(15)30047-2. doi:, 10.1016/j.jsb.2015.08.009. PMID:26291392<ref>PMID:26291392</ref>
-
Description: Crystal structure of Operophtera brumata CPV19 polyhedra
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Evans, G]]
+
<div class="pdbe-citations 5a99" style="background-color:#fffaf0;"></div>
-
[[Category: Ji, X]]
+
 
-
[[Category: Axford, D]]
+
==See Also==
-
[[Category: Sutton, G]]
+
*[[Polyhedrin|Polyhedrin]]
-
[[Category: Ginn, H.M]]
+
== References ==
-
[[Category: Stuart, D.I]]
+
<references/>
-
[[Category: Owen, R]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Operophtera brumata cypovirus 19]]
 +
[[Category: Axford D]]
 +
[[Category: Evans G]]
 +
[[Category: Ginn HM]]
 +
[[Category: Ji X]]
 +
[[Category: Owen R]]
 +
[[Category: Stuart DI]]
 +
[[Category: Sutton G]]

Current revision

Crystal structure of Operophtera brumata CPV19 polyhedra

PDB ID 5a99

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools