5a88

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'''Unreleased structure'''
 
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The entry 5a88 is ON HOLD until Paper Publication
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==Crystal structure of the riboflavin kinase module of FAD synthetase from Corynebacterium ammoniagenes in complex with ADP==
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<StructureSection load='5a88' size='340' side='right'caption='[[5a88]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5a88]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A88 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A88 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a88 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a88 OCA], [https://pdbe.org/5a88 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a88 RCSB], [https://www.ebi.ac.uk/pdbsum/5a88 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a88 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RIBF_CORAM RIBF_CORAM]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Riboflavin kinases (RFKs) catalyse the phosphorylation of riboflavin to produce FMN. In most bacteria this activity is catalysed by the C-terminal module of a bifunctional enzyme, FAD synthetase (FADS), which also catalyses the transformation of FMN into FAD through its N-terminal FMN adenylyltransferase (FMNAT) module. The RFK module of FADS is a homologue of eukaryotic monofunctional RFKs, while the FMNAT module lacks homologyto eukaryotic enzymes involved in FAD production. Previously, the crystal structure of Corynebacterium ammoniagenes FADS (CaFADS) was determined in its apo form. This structure predicted a dimer-of-trimers organization with the catalytic sites of two modules of neighbouring protomers approaching each other, leading to a hypothesis about the possibility of FMN channelling in the oligomeric protein. Here, two crystal structures of the individually expressed RFK module of CaFADS in complex with the products of the reaction, FMN and ADP, are presented. Structures are complemented with computational simulations, binding studies and kinetic characterization. Binding of ligands triggers dramatic structural changes in the RFK module, which affect large portions of the protein. Substrate inhibition and molecular-dynamics simulations allowed the conformational changes that take place along the RFK catalytic cycle to be established. The influence of these conformational changes in the FMNAT module is also discussed in the context of the full-length CaFADS protomer and the quaternary organization.
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Authors: Herguedas, B., Martinez-Julvez, M., Hermoso, J.A., Medina, M.
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Structural insights into the synthesis of FMN in prokaryotic organisms.,Herguedas B, Lans I, Sebastian M, Hermoso JA, Martinez-Julvez M, Medina M Acta Crystallogr D Biol Crystallogr. 2015 Dec 1;71(Pt 12):2526-42. doi:, 10.1107/S1399004715019641. Epub 2015 Nov 27. PMID:26627660<ref>PMID:26627660</ref>
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Description: Crystal structure of the riboflavin kinase module of FAD synthetase from Corynebacterium ammoniagenes in complex with ADP
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Medina, M]]
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<div class="pdbe-citations 5a88" style="background-color:#fffaf0;"></div>
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[[Category: Hermoso, J.A]]
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== References ==
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[[Category: Martinez-Julvez, M]]
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<references/>
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[[Category: Herguedas, B]]
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__TOC__
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</StructureSection>
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[[Category: Corynebacterium ammoniagenes]]
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[[Category: Large Structures]]
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[[Category: Herguedas B]]
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[[Category: Hermoso JA]]
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[[Category: Martinez-Julvez M]]
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[[Category: Medina M]]

Current revision

Crystal structure of the riboflavin kinase module of FAD synthetase from Corynebacterium ammoniagenes in complex with ADP

PDB ID 5a88

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