5cvk
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5cvk is ON HOLD Authors: Ngo, H.P.T.; Kang, L.W. Description: Structure of Xoo1075, a peptide deformyase from Xanthomonas oryzae pv. oryze, in comp...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Structure of Xoo1075, a peptide deformyase from Xanthomonas oryzae pv. oryze, in complex with fragment 493== | |
| - | + | <StructureSection load='5cvk' size='340' side='right'caption='[[5cvk]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[5cvk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_KACC_10331 Xanthomonas oryzae pv. oryzae KACC 10331]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CVK FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=56E:ETHYL+N-[(5-METHYLTHIOPHEN-3-YL)CARBONYL]GLYCINATE'>56E</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cvk OCA], [https://pdbe.org/5cvk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cvk RCSB], [https://www.ebi.ac.uk/pdbsum/5cvk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cvk ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Xanthomonas oryzae pv. oryzae KACC 10331]] | ||
| + | [[Category: Kang LW]] | ||
| + | [[Category: Ngo HPT]] | ||
Current revision
Structure of Xoo1075, a peptide deformyase from Xanthomonas oryzae pv. oryze, in complex with fragment 493
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