2mpj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:08, 15 May 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==NMR structure of Xenopus RecQ4 zinc knuckle==
==NMR structure of Xenopus RecQ4 zinc knuckle==
-
<StructureSection load='2mpj' size='340' side='right' caption='[[2mpj]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
+
<StructureSection load='2mpj' size='340' side='right'caption='[[2mpj]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2mpj]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MPJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2mpj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MPJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mpj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mpj RCSB], [http://www.ebi.ac.uk/pdbsum/2mpj PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mpj OCA], [https://pdbe.org/2mpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mpj RCSB], [https://www.ebi.ac.uk/pdbsum/2mpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mpj ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B1WBC8_XENLA B1WBC8_XENLA]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The RecQ4 helicase belongs to the ubiquitous RecQ family but its exact role in the cell is not completely understood. In addition to the helicase domain, RecQ4 has a unique N-terminal part that is essential for viability and is constituted by a region homologous to the yeast Sld2 replication initiation factor, followed by a cysteine-rich region, predicted to fold as a Zn knuckle. We carried out a structural and biochemical analysis of both the human and Xenopus laevis RecQ4 cysteine-rich regions, and showed by NMR spectroscopy that the Xenopus fragment indeed assumes the canonical Zn knuckle fold, whereas the human sequence remains unstructured, consistent with the mutation of one of the Zn ligands. Both the human and Xenopus Zn knuckles bind to a variety of nucleic acid substrates, with a mild preference for RNA. We also investigated the effect of a segment located upstream the Zn knuckle that is highly conserved and rich in positively charged and aromatic residues, partially overlapping with the C-terminus of the Sld2-like domain. In both the human and Xenopus proteins, the presence of this region strongly enhances binding to nucleic acids. These results reveal novel possible roles of RecQ4 in DNA replication and genome stability.
 +
 +
Structural and biochemical characterization of an RNA/DNA binding motif in the N-terminal domain of RecQ4 helicases.,Marino F, Mojumdar A, Zucchelli C, Bhardwaj A, Buratti E, Vindigni A, Musco G, Onesti S Sci Rep. 2016 Feb 18;6:21501. doi: 10.1038/srep21501. PMID:26888063<ref>PMID:26888063</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2mpj" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Marino, F]]
+
[[Category: Large Structures]]
-
[[Category: Mojumdar, A]]
+
[[Category: Xenopus laevis]]
-
[[Category: Musco, G]]
+
[[Category: Marino F]]
-
[[Category: Onesti, S]]
+
[[Category: Mojumdar A]]
-
[[Category: Zucchelli, C]]
+
[[Category: Musco G]]
-
[[Category: Dna/rna binding]]
+
[[Category: Onesti S]]
-
[[Category: Helicase]]
+
[[Category: Zucchelli C]]
-
[[Category: Nucleotide binding protein]]
+
-
[[Category: Protein]]
+
-
[[Category: Recq4]]
+
-
[[Category: Zinc knuckle]]
+

Current revision

NMR structure of Xenopus RecQ4 zinc knuckle

PDB ID 2mpj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools