4zhd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:18, 27 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Siderocalin-mediated recognition and cellular uptake of actinides==
==Siderocalin-mediated recognition and cellular uptake of actinides==
-
<StructureSection load='4zhd' size='340' side='right' caption='[[4zhd]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+
<StructureSection load='4zhd' size='340' side='right'caption='[[4zhd]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4zhd]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZHD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4zhd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. The January 2016 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Siderocalin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2016_1 10.2210/rcsb_pdb/mom_2016_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZHD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZHD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4OZ:METHYL+N-(2,3-DIHYDROXYBENZOYL)-O-FORMYL-L-SERINATE'>4OZ</scene>, <scene name='pdbligand=4PU:PLUTONIUM+ION'>4PU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4zhc|4zhc]], [[4zhf|4zhf]], [[4zhg|4zhg]], [[4zhh|4zhh]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4OZ:METHYL+N-(2,3-DIHYDROXYBENZOYL)-O-FORMYL-L-SERINATE'>4OZ</scene>, <scene name='pdbligand=4PU:PLUTONIUM+ION'>4PU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zhd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zhd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4zhd RCSB], [http://www.ebi.ac.uk/pdbsum/4zhd PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zhd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zhd OCA], [https://pdbe.org/4zhd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zhd RCSB], [https://www.ebi.ac.uk/pdbsum/4zhd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zhd ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NGAL_HUMAN NGAL_HUMAN]] Iron-trafficking protein involved in multiple processes such as apoptosis, innate immunity and renal development. Binds iron through association with 2,5-dihydroxybenzoic acid (2,5-DHBA), a siderophore that shares structural similarities with bacterial enterobactin, and delivers or removes iron from the cell, depending on the context. Iron-bound form (holo-24p3) is internalized following binding to the SLC22A17 (24p3R) receptor, leading to release of iron and subsequent increase of intracellular iron concentration. In contrast, association of the iron-free form (apo-24p3) with the SLC22A17 (24p3R) receptor is followed by association with an intracellular siderophore, iron chelation and iron transfer to the extracellular medium, thereby reducing intracellular iron concentration. Involved in apoptosis due to interleukin-3 (IL3) deprivation: iron-loaded form increases intracellular iron concentration without promoting apoptosis, while iron-free form decreases intracellular iron levels, inducing expression of the proapoptotic protein BCL2L11/BIM, resulting in apoptosis. Involved in innate immunity, possibly by sequestrating iron, leading to limit bacterial growth.<ref>PMID:12453413</ref>
+
[https://www.uniprot.org/uniprot/NGAL_HUMAN NGAL_HUMAN] Iron-trafficking protein involved in multiple processes such as apoptosis, innate immunity and renal development. Binds iron through association with 2,5-dihydroxybenzoic acid (2,5-DHBA), a siderophore that shares structural similarities with bacterial enterobactin, and delivers or removes iron from the cell, depending on the context. Iron-bound form (holo-24p3) is internalized following binding to the SLC22A17 (24p3R) receptor, leading to release of iron and subsequent increase of intracellular iron concentration. In contrast, association of the iron-free form (apo-24p3) with the SLC22A17 (24p3R) receptor is followed by association with an intracellular siderophore, iron chelation and iron transfer to the extracellular medium, thereby reducing intracellular iron concentration. Involved in apoptosis due to interleukin-3 (IL3) deprivation: iron-loaded form increases intracellular iron concentration without promoting apoptosis, while iron-free form decreases intracellular iron levels, inducing expression of the proapoptotic protein BCL2L11/BIM, resulting in apoptosis. Involved in innate immunity, possibly by sequestrating iron, leading to limit bacterial growth.<ref>PMID:12453413</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4zhd" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Neutrophil gelatinase-associated lipocalin|Neutrophil gelatinase-associated lipocalin]]
 +
*[[Siderocalin 3D structures|Siderocalin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Abergel, R J]]
+
[[Category: Homo sapiens]]
-
[[Category: Allred, B E]]
+
[[Category: Large Structures]]
-
[[Category: An, D D]]
+
[[Category: RCSB PDB Molecule of the Month]]
-
[[Category: Gauny, S S]]
+
[[Category: Siderocalin]]
-
[[Category: Ralston, C Y]]
+
[[Category: Abergel RJ]]
-
[[Category: Rupert, P B]]
+
[[Category: Allred BE]]
-
[[Category: Strong, R K]]
+
[[Category: An DD]]
-
[[Category: Sturzbecher-Hoehne, M]]
+
[[Category: Gauny SS]]
-
[[Category: Metal binding protein-inhibitor complex]]
+
[[Category: Ralston CY]]
 +
[[Category: Rupert PB]]
 +
[[Category: Strong RK]]
 +
[[Category: Sturzbecher-Hoehne M]]

Current revision

Siderocalin-mediated recognition and cellular uptake of actinides

PDB ID 4zhd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools