5a3f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:03, 10 January 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the dynamin tetramer==
==Crystal structure of the dynamin tetramer==
-
<StructureSection load='5a3f' size='340' side='right' caption='[[5a3f]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
+
<StructureSection load='5a3f' size='340' side='right'caption='[[5a3f]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5a3f]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5A3F FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5a3f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A3F FirstGlance]. <br>
-
</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dynamin_GTPase Dynamin GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.5 3.6.5.5] </span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.7&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a3f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5a3f RCSB], [http://www.ebi.ac.uk/pdbsum/5a3f PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a3f OCA], [https://pdbe.org/5a3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a3f RCSB], [https://www.ebi.ac.uk/pdbsum/5a3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a3f ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DYN3_HUMAN DYN3_HUMAN]] Microtubule-associated force-producing protein involved in producing microtubule bundles and able to bind and hydrolyze GTP. Most probably involved in vesicular trafficking processes, in particular endocytosis (By similarity).
+
[https://www.uniprot.org/uniprot/DYN3_HUMAN DYN3_HUMAN] Microtubule-associated force-producing protein involved in producing microtubule bundles and able to bind and hydrolyze GTP. Most probably involved in vesicular trafficking processes, in particular endocytosis (By similarity).
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The mechanochemical protein dynamin is the prototype of the dynamin superfamily of large GTPases, which shape and remodel membranes in diverse cellular processes. Dynamin forms predominantly tetramers in the cytosol, which oligomerize at the neck of clathrin-coated vesicles to mediate constriction and subsequent scission of the membrane. Previous studies have described the architecture of dynamin dimers, but the molecular determinants for dynamin assembly and its regulation have remained unclear. Here we present the crystal structure of the human dynamin tetramer in the nucleotide-free state. Combining structural data with mutational studies, oligomerization measurements and Markov state models of molecular dynamics simulations, we suggest a mechanism by which oligomerization of dynamin is linked to the release of intramolecular autoinhibitory interactions. We elucidate how mutations that interfere with tetramer formation and autoinhibition can lead to the congenital muscle disorders Charcot-Marie-Tooth neuropathy and centronuclear myopathy, respectively. Notably, the bent shape of the tetramer explains how dynamin assembles into a right-handed helical oligomer of defined diameter, which has direct implications for its function in membrane constriction.
 +
 
 +
Crystal structure of the dynamin tetramer.,Reubold TF, Faelber K, Plattner N, Posor Y, Ketel K, Curth U, Schlegel J, Anand R, Manstein DJ, Noe F, Haucke V, Daumke O, Eschenburg S Nature. 2015 Aug 24. doi: 10.1038/nature14880. PMID:26302298<ref>PMID:26302298</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5a3f" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Dynamin GTPase]]
+
[[Category: Homo sapiens]]
-
[[Category: Anand, R]]
+
[[Category: Large Structures]]
-
[[Category: Branz, K]]
+
[[Category: Anand R]]
-
[[Category: Curth, U]]
+
[[Category: Branz K]]
-
[[Category: Daumke, O]]
+
[[Category: Curth U]]
-
[[Category: Eschenburg, S]]
+
[[Category: Daumke O]]
-
[[Category: Faelber, K]]
+
[[Category: Eschenburg S]]
-
[[Category: Haucke, V]]
+
[[Category: Faelber K]]
-
[[Category: Manstein, D J]]
+
[[Category: Haucke V]]
-
[[Category: Noe, F]]
+
[[Category: Manstein DJ]]
-
[[Category: Plattner, N]]
+
[[Category: Noe F]]
-
[[Category: Posor, Y]]
+
[[Category: Plattner N]]
-
[[Category: Reubold, T F]]
+
[[Category: Posor Y]]
-
[[Category: Schlegel, J]]
+
[[Category: Reubold TF]]
-
[[Category: Endocytosis]]
+
[[Category: Schlegel J]]
-
[[Category: Gtpase]]
+
-
[[Category: Membrane remodeling]]
+

Current revision

Crystal structure of the dynamin tetramer

PDB ID 5a3f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools