5dfb
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5dfb is ON HOLD Authors: Tallant, C., Baud, M., Lin-Shiao, E., Chirgadze, D.Y., Ciulli, A. Description: Crystal structure of BRD2(BD2) mutant W370F...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of BRD2(BD2) mutant W370F in the free form== | |
| + | <StructureSection load='5dfb' size='340' side='right'caption='[[5dfb]], [[Resolution|resolution]] 1.40Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5dfb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DFB FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dfb OCA], [https://pdbe.org/5dfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dfb RCSB], [https://www.ebi.ac.uk/pdbsum/5dfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dfb ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/BRD2_HUMAN BRD2_HUMAN] May play a role in spermatogenesis or folliculogenesis (By similarity). Binds hyperacetylated chromatin and plays a role in the regulation of transcription, probably by chromatin remodeling. Regulates transcription of the CCND1 gene. Plays a role in nucleosome assembly.<ref>PMID:18406326</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We describe new synthetic routes developed toward a range of substituted analogues of bromo and extra-terminal (BET) bromodomain inhibitors I-BET762/JQ1 based on the triazolo-benzodiazepine scaffold. These new routes allow for the derivatization of the methoxyphenyl and chlorophenyl rings, in addition to the diazepine ternary center and the side chain methylene moiety. Substitution at the level of the side chain methylene afforded compounds targeting specifically and potently engineered BET bromodomains designed as part of a bump and hole approach. We further demonstrate that marked selectivity for the second over the first bromodomain can be achieved with an indole derivative that exploits differential interaction with an aspartate/histidine conservative substitution on the BC loop of BET bromodomains. | ||
| - | + | New Synthetic Routes to Triazolo-benzodiazepine Analogues: Expanding the Scope of the Bump-and-Hole Approach for Selective Bromo and Extra-Terminal (BET) Bromodomain Inhibition.,Baud MG, Lin-Shiao E, Zengerle M, Tallant C, Ciulli A J Med Chem. 2016 Feb 25;59(4):1492-500. doi: 10.1021/acs.jmedchem.5b01135. Epub, 2015 Oct 1. PMID:26367539<ref>PMID:26367539</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5dfb" style="background-color:#fffaf0;"></div> |
| - | [[Category: Chirgadze | + | |
| - | [[Category: | + | ==See Also== |
| - | [[Category: | + | *[[Bromodomain-containing protein 3D structures|Bromodomain-containing protein 3D structures]] |
| - | [[Category: Tallant | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Homo sapiens]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Baud M]] | ||
| + | [[Category: Chirgadze DY]] | ||
| + | [[Category: Ciulli A]] | ||
| + | [[Category: Lin-Shiao E]] | ||
| + | [[Category: Tallant C]] | ||
Current revision
Crystal structure of BRD2(BD2) mutant W370F in the free form
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