This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4yty

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:38, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of rat xanthine oxidoreductase, C535A/C992R/C1324S, NADH bound form==
==Structure of rat xanthine oxidoreductase, C535A/C992R/C1324S, NADH bound form==
-
<StructureSection load='4yty' size='340' side='right' caption='[[4yty]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='4yty' size='340' side='right'caption='[[4yty]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4yty]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YTY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YTY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4yty]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YTY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YTY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=URC:URIC+ACID'>URC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ysw|4ysw]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=URC:URIC+ACID'>URC</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yty OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4yty RCSB], [http://www.ebi.ac.uk/pdbsum/4yty PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yty OCA], [https://pdbe.org/4yty PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yty RCSB], [https://www.ebi.ac.uk/pdbsum/4yty PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yty ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/XDH_RAT XDH_RAT]] Key enzyme in purine degradation. Catalyzes the oxidation of hypoxanthine to xanthine. Catalyzes the oxidation of xanthine to uric acid. Contributes to the generation of reactive oxygen species.<ref>PMID:17301076</ref>
+
[https://www.uniprot.org/uniprot/XDH_RAT XDH_RAT] Key enzyme in purine degradation. Catalyzes the oxidation of hypoxanthine to xanthine. Catalyzes the oxidation of xanthine to uric acid. Contributes to the generation of reactive oxygen species.<ref>PMID:17301076</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4yty" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Xanthine dehydrogenase|Xanthine dehydrogenase]]
+
*[[Xanthine dehydrogenase 3D structures|Xanthine dehydrogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Eger, B T]]
+
[[Category: Large Structures]]
-
[[Category: Kawaguchi, Y]]
+
[[Category: Rattus norvegicus]]
-
[[Category: Matsumura, T]]
+
[[Category: Eger BT]]
-
[[Category: Nishino, T]]
+
[[Category: Kawaguchi Y]]
-
[[Category: Okamoto, K]]
+
[[Category: Matsumura T]]
-
[[Category: Pai, E F]]
+
[[Category: Nishino T]]
-
[[Category: D/o conversion]]
+
[[Category: Okamoto K]]
-
[[Category: Oxidoreductase]]
+
[[Category: Pai EF]]
-
[[Category: Xanthine dehydrogenase]]
+
-
[[Category: Xanthine oxidase]]
+
-
[[Category: Xanthine oxidoreductase]]
+

Current revision

Structure of rat xanthine oxidoreductase, C535A/C992R/C1324S, NADH bound form

PDB ID 4yty

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools