2n6v
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 2n6v is ON HOLD Authors: Link, A., Maksimov, M.O. Description: Astexin3 Category: Unreleased Structures Category: Maksimov, M.O [[Category:...) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Solution study of Astexin3== | |
| + | <StructureSection load='2n6v' size='340' side='right'caption='[[2n6v]]' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2n6v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Asticcacaulis_excentricus_CB_48 Asticcacaulis excentricus CB 48]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N6V FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2n6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2n6v OCA], [https://pdbe.org/2n6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2n6v RCSB], [https://www.ebi.ac.uk/pdbsum/2n6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2n6v ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/ASTX3_ASTEC ASTX3_ASTEC] Shows weak antimicrobial activity against its phylogenetic relative Caulobacter crescentus. Does not show activity against other bacteria tested (E.coli, Vibrio sp, Burkhoderia thailandensis, and Salmonella newport).[UniProtKB:E8RMD3] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Lasso peptide isopeptidase is an enzyme that specifically hydrolyzes the isopeptide bond of lasso peptides, rendering these peptides linear. In order to carry out a detailed structure-activity analysis of the lasso peptide isopeptidase AtxE2 from Asticcacaulis excentricus, we solved NMR structures of its substrates astexin-2 and astexin-3. Using in vitro enzyme assays, we show that the C-terminal tail portion of these peptides is dispensable with regards to isopeptidase activity. A collection of astexin-2 and astexin-3 variants with alanine substitutions at each position within the ring and the loop was constructed, and we showed that all of these peptides except for one were cleaved by the isopeptidase. Thus, much like the lasso peptide biosynthetic enzymes, lasso peptide isopeptidase has broad substrate specificity. Quantitative analysis of the cleavage reactions indicated that alanine substitutions in loop positions of these peptides led to reduce cleavage, suggesting that the loop is serving as a recognition element for the isopeptidase. | ||
| - | + | Elucidating the Specificity Determinants of the AtxE2 Lasso Peptide Isopeptidase.,Maksimov MO, Koos JD, Zong C, Lisko B, Link AJ J Biol Chem. 2015 Nov 3. pii: jbc.M115.694083. PMID:26534965<ref>PMID:26534965</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 2n6v" style="background-color:#fffaf0;"></div> |
| - | [[Category: Link | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Asticcacaulis excentricus CB 48]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Link A]] | ||
| + | [[Category: Maksimov MO]] | ||
Current revision
Solution study of Astexin3
| |||||||||||
