5dkk
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5dkk is ON HOLD Authors: Heintz, U., Schlichting, I. Description: Category: Unreleased Structures Category: Heintz, U [[Category: Schlicht...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Structure of the dark-state monomer of the blue light photoreceptor Aureochrome 1a LOV from P. tricornutum== | |
| + | <StructureSection load='5dkk' size='340' side='right'caption='[[5dkk]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5dkk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phaeodactylum_tricornutum Phaeodactylum tricornutum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DKK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DKK FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dkk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dkk OCA], [https://pdbe.org/5dkk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dkk RCSB], [https://www.ebi.ac.uk/pdbsum/5dkk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dkk ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/B7G9J2_PHATC B7G9J2_PHATC] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The design of synthetic optogenetic tools that allow precise spatiotemporal control of biological processes previously inaccessible to optogenetic control has developed rapidly over the last years. Rational design of such tools requires detailed knowledge of allosteric light signaling in natural photoreceptors. To understand allosteric communication between sensor and effector domains, characterization of all relevant signaling states is required. Here, we describe the mechanism of light-dependent DNA binding of the light-oxygen-voltage (LOV) transcription factor Aureochrome 1a from Phaeodactylum tricornutum (PtAu1a) and present crystal structures of a dark state LOV monomer and a fully light-adapted LOV dimer. In combination with hydrogen/deuterium-exchange, solution scattering data and DNA-binding experiments, our studies reveal a light-sensitive interaction between the LOV and basic region leucine zipper DNA-binding domain that together with LOV dimerization results in modulation of the DNA affinity of PtAu1a. We discuss the implications of these results for the design of synthetic LOV-based photosensors with application in optogenetics. | ||
| - | + | Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence.,Heintz U, Schlichting I Elife. 2016 Jan 12;5:e11860. doi: 10.7554/eLife.11860. PMID:26754770<ref>PMID:26754770</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Heintz | + | <div class="pdbe-citations 5dkk" style="background-color:#fffaf0;"></div> |
| - | [[Category: Schlichting | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Phaeodactylum tricornutum]] | ||
| + | [[Category: Heintz U]] | ||
| + | [[Category: Schlichting I]] | ||
Current revision
Structure of the dark-state monomer of the blue light photoreceptor Aureochrome 1a LOV from P. tricornutum
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