This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yq6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:15, 9 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==PRD1 vertex protein P5==
==PRD1 vertex protein P5==
-
<StructureSection load='1yq6' size='340' side='right' caption='[[1yq6]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+
<StructureSection load='1yq6' size='340' side='right'caption='[[1yq6]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1yq6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1yq6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_PRD1 Enterobacteria phage PRD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YQ6 FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1yq5|1yq5]], [[1yq8|1yq8]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq6 OCA], [http://pdbe.org/1yq6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yq6 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq6 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yq6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq6 OCA], [https://pdbe.org/1yq6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yq6 RCSB], [https://www.ebi.ac.uk/pdbsum/1yq6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yq6 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD]] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>
+
[https://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bpprd]]
+
[[Category: Enterobacteria phage PRD1]]
-
[[Category: Bamford, D H]]
+
[[Category: Large Structures]]
-
[[Category: Goldman, A]]
+
[[Category: Bamford DH]]
-
[[Category: Huiskonen, J T]]
+
[[Category: Goldman A]]
-
[[Category: Merckel, M C]]
+
[[Category: Huiskonen JT]]
-
[[Category: Tuma, R]]
+
[[Category: Merckel MC]]
-
[[Category: Beta-jelly-roll]]
+
[[Category: Tuma R]]
-
[[Category: Beta-spiral]]
+
-
[[Category: Viral protein]]
+

Current revision

PRD1 vertex protein P5

PDB ID 1yq6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools