1dxl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 6 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Dihydrolipoamide dehydrogenase of glycine decarboxylase from Pisum Sativum==
==Dihydrolipoamide dehydrogenase of glycine decarboxylase from Pisum Sativum==
-
<StructureSection load='1dxl' size='340' side='right' caption='[[1dxl]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
+
<StructureSection load='1dxl' size='340' side='right'caption='[[1dxl]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1dxl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Garden_pea Garden pea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DXL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DXL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1dxl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DXL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DXL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.15&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lvl|1lvl]], [[3lad|3lad]], [[1ojt|1ojt]], [[1lpf|1lpf]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydrolipoyl_dehydrogenase Dihydrolipoyl dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.4 1.8.1.4] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dxl OCA], [https://pdbe.org/1dxl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dxl RCSB], [https://www.ebi.ac.uk/pdbsum/1dxl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dxl ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dxl OCA], [http://pdbe.org/1dxl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dxl RCSB], [http://www.ebi.ac.uk/pdbsum/1dxl PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DLDH_PEA DLDH_PEA]] Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
+
[https://www.uniprot.org/uniprot/DLDH_PEA DLDH_PEA] Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/1dxl_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/1dxl_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dxl ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 36: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Dihydrolipoyl dehydrogenase]]
+
[[Category: Large Structures]]
-
[[Category: Garden pea]]
+
[[Category: Pisum sativum]]
-
[[Category: Bourguignon, J]]
+
[[Category: Bourguignon J]]
-
[[Category: Cohen-Addad, C]]
+
[[Category: Cohen-Addad C]]
-
[[Category: Douce, R]]
+
[[Category: Douce R]]
-
[[Category: Faure, M]]
+
[[Category: Faure M]]
-
[[Category: Macherel, D]]
+
[[Category: Macherel D]]
-
[[Category: Neuburger, M]]
+
[[Category: Neuburger M]]
-
[[Category: Dihydrolipoamide dehydrogenase]]
+
-
[[Category: Flavoprotein]]
+
-
[[Category: Glycine decarboxylase complex]]
+
-
[[Category: Multienzyme complex protein]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Pyruvate dehydrogenase complex]]
+

Current revision

Dihydrolipoamide dehydrogenase of glycine decarboxylase from Pisum Sativum

PDB ID 1dxl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools