2pso

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:08, 30 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Human StarD13 (DLC2) lipid transfer and protein localization domain==
==Human StarD13 (DLC2) lipid transfer and protein localization domain==
-
<StructureSection load='2pso' size='340' side='right' caption='[[2pso]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+
<StructureSection load='2pso' size='340' side='right'caption='[[2pso]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2pso]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PSO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PSO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2pso]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PSO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PSO FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">STARD13, DLC2, GT650 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pso FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pso OCA], [http://pdbe.org/2pso PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pso RCSB], [http://www.ebi.ac.uk/pdbsum/2pso PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pso FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pso OCA], [https://pdbe.org/2pso PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pso RCSB], [https://www.ebi.ac.uk/pdbsum/2pso PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pso ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/STA13_HUMAN STA13_HUMAN]] GTPase-activating protein for RhoA, and perhaps for Cdc42. May be involved in regulation of cytoskeletal reorganization, cell proliferation and cell motility. Acts a tumor suppressor in hepatocellular carcinoma cells.<ref>PMID:14697242</ref> <ref>PMID:16217026</ref>
+
[https://www.uniprot.org/uniprot/STA13_HUMAN STA13_HUMAN] GTPase-activating protein for RhoA, and perhaps for Cdc42. May be involved in regulation of cytoskeletal reorganization, cell proliferation and cell motility. Acts a tumor suppressor in hepatocellular carcinoma cells.<ref>PMID:14697242</ref> <ref>PMID:16217026</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/2pso_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/2pso_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pso ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 31: Line 32:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Arrowsmith, C H]]
+
[[Category: Large Structures]]
-
[[Category: Berg, S Van den]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Berglund, H]]
+
[[Category: Berglund H]]
-
[[Category: Busam, R]]
+
[[Category: Busam R]]
-
[[Category: Collins, R]]
+
[[Category: Collins R]]
-
[[Category: Dahlgren, L G]]
+
[[Category: Dahlgren LG]]
-
[[Category: Edwards, A]]
+
[[Category: Edwards A]]
-
[[Category: Flodin, S]]
+
[[Category: Flodin S]]
-
[[Category: Flores, A]]
+
[[Category: Flores A]]
-
[[Category: Graslund, S]]
+
[[Category: Graslund S]]
-
[[Category: Hallberg, B M]]
+
[[Category: Hallberg BM]]
-
[[Category: Hammarstrom, M]]
+
[[Category: Hammarstrom M]]
-
[[Category: Holmberg-Schiavone, L]]
+
[[Category: Holmberg-Schiavone L]]
-
[[Category: Johansson, I]]
+
[[Category: Johansson I]]
-
[[Category: Kallas, A]]
+
[[Category: Kallas A]]
-
[[Category: Karlberg, T]]
+
[[Category: Karlberg T]]
-
[[Category: Kotenyova, T]]
+
[[Category: Kotenyova T]]
-
[[Category: Lehtio, L]]
+
[[Category: Lehtio L]]
-
[[Category: Moche, M]]
+
[[Category: Moche M]]
-
[[Category: Nordlund, P]]
+
[[Category: Nordlund P]]
-
[[Category: Nyman, T]]
+
[[Category: Nyman T]]
-
[[Category: Ogg, D]]
+
[[Category: Ogg D]]
-
[[Category: Persson, C]]
+
[[Category: Persson C]]
-
[[Category: Structural genomic]]
+
[[Category: Sagemark J]]
-
[[Category: Sagemark, J]]
+
[[Category: Stenmark P]]
-
[[Category: Stenmark, P]]
+
[[Category: Sundstrom M]]
-
[[Category: Sundstrom, M]]
+
[[Category: Thorsell AG]]
-
[[Category: Thorsell, A G]]
+
[[Category: Van den Berg S]]
-
[[Category: Weigelt, J]]
+
[[Category: Weigelt J]]
-
[[Category: Welin, M]]
+
[[Category: Welin M]]
-
[[Category: Alpha and beta protein]]
+
-
[[Category: Helix swapping]]
+
-
[[Category: Lipid binding]]
+
-
[[Category: Sgc]]
+
-
[[Category: Unknown function]]
+

Current revision

Human StarD13 (DLC2) lipid transfer and protein localization domain

PDB ID 2pso

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools