This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2nwq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:11, 28 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Short chain dehydrogenase from Pseudomonas aeruginosa==
==Short chain dehydrogenase from Pseudomonas aeruginosa==
-
<StructureSection load='2nwq' size='340' side='right' caption='[[2nwq]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='2nwq' size='340' side='right'caption='[[2nwq]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2nwq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NWQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2nwq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NWQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NWQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nwq OCA], [http://pdbe.org/2nwq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nwq RCSB], [http://www.ebi.ac.uk/pdbsum/2nwq PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nwq OCA], [https://pdbe.org/2nwq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nwq RCSB], [https://www.ebi.ac.uk/pdbsum/2nwq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nwq ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9HUQ6_PSEAE Q9HUQ6_PSEAE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nw/2nwq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nw/2nwq_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nwq ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beattie, B]]
+
[[Category: Large Structures]]
-
[[Category: Chirgadze, N Y]]
+
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Dharamsi, A]]
+
[[Category: Beattie B]]
-
[[Category: Edwards, A M]]
+
[[Category: Chirgadze NY]]
-
[[Category: Kimber, M S]]
+
[[Category: Dharamsi A]]
-
[[Category: McGrath, T E]]
+
[[Category: Edwards AM]]
-
[[Category: Nethery-Brokx, K]]
+
[[Category: Kimber MS]]
-
[[Category: Pai, E F]]
+
[[Category: McGrath TE]]
-
[[Category: Thambipillai, D]]
+
[[Category: Nethery-Brokx K]]
-
[[Category: Virag, C]]
+
[[Category: Pai EF]]
-
[[Category: Oxidoreductase]]
+
[[Category: Thambipillai D]]
-
[[Category: Short-chain dehydrogenase]]
+
[[Category: Virag C]]

Current revision

Short chain dehydrogenase from Pseudomonas aeruginosa

PDB ID 2nwq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools