2q4k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:20, 21 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Ensemble refinement of the protein crystal structure of gene product from Homo sapiens Hs.433573==
==Ensemble refinement of the protein crystal structure of gene product from Homo sapiens Hs.433573==
-
<StructureSection load='2q4k' size='340' side='right' caption='[[2q4k]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='2q4k' size='340' side='right'caption='[[2q4k]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2q4k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q4K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Q4K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2q4k]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q4K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q4K FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;, 16 models</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ztp|1ztp]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C11orf68, BLES03, Hs.433573 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q4k OCA], [https://pdbe.org/2q4k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q4k RCSB], [https://www.ebi.ac.uk/pdbsum/2q4k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q4k ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2q4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q4k OCA], [http://pdbe.org/2q4k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2q4k RCSB], [http://www.ebi.ac.uk/pdbsum/2q4k PDBsum]</span></td></tr>
+
</table>
</table>
-
{{Large structure}}
+
== Function ==
 +
[https://www.uniprot.org/uniprot/CK068_HUMAN CK068_HUMAN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q4/2q4k_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q4/2q4k_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q4k ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Kondrashov, D A]]
+
[[Category: Kondrashov DA]]
-
[[Category: Levin, E J]]
+
[[Category: Levin EJ]]
-
[[Category: Phillips, G N]]
+
[[Category: Phillips Jr GN]]
-
[[Category: Wesenberg, G E]]
+
[[Category: Wesenberg GE]]
-
[[Category: Bc010512]]
+
-
[[Category: Bles03]]
+
-
[[Category: Cesg]]
+
-
[[Category: Ensemble refinement]]
+
-
[[Category: Hs 433573]]
+
-
[[Category: P5326]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Refinement methodology development]]
+
-
[[Category: Unknown function]]
+

Current revision

Ensemble refinement of the protein crystal structure of gene product from Homo sapiens Hs.433573

PDB ID 2q4k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools