This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gzo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:00, 29 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural Genomics Consortium target SOR39==
==NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural Genomics Consortium target SOR39==
-
<StructureSection load='2gzo' size='340' side='right' caption='[[2gzo]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2gzo' size='340' side='right'caption='[[2gzo]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2gzo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GZO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2gzo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GZO FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SO3346 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gzo OCA], [http://pdbe.org/2gzo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gzo RCSB], [http://www.ebi.ac.uk/pdbsum/2gzo PDBsum], [http://www.topsan.org/Proteins/NESGC/2gzo TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gzo OCA], [https://pdbe.org/2gzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gzo RCSB], [https://www.ebi.ac.uk/pdbsum/2gzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gzo ProSAT], [https://www.topsan.org/Proteins/NESGC/2gzo TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Y3346_SHEON Y3346_SHEON]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/2gzo_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/2gzo_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gzo ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 700550]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Shewanella oneidensis]]
-
[[Category: Cunningham, K]]
+
[[Category: Acton TB]]
-
[[Category: Eletsky, A]]
+
[[Category: Cunningham K]]
-
[[Category: Liu, G]]
+
[[Category: Eletsky A]]
-
[[Category: Ma, L C]]
+
[[Category: Liu G]]
-
[[Category: Mei, J]]
+
[[Category: Ma LC]]
-
[[Category: Montelione, G T]]
+
[[Category: Mei J]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Ritu, S]]
+
[[Category: Ritu S]]
-
[[Category: Rost, B]]
+
[[Category: Rost B]]
-
[[Category: Singarapu, K K]]
+
[[Category: Singarapu KK]]
-
[[Category: Sukumaran, D K]]
+
[[Category: Sukumaran DK]]
-
[[Category: Szyperski, T]]
+
[[Category: Szyperski T]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Xu, D]]
+
[[Category: Xu D]]
-
[[Category: Alpha-beta]]
+
-
[[Category: Gft-nmr]]
+
-
[[Category: Nesgc]]
+
-
[[Category: Protein structure]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural Genomics Consortium target SOR39

PDB ID 2gzo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools