|
|
| (3 intermediate revisions not shown.) |
| Line 1: |
Line 1: |
| | + | |
| | ==Solution Structure of the SPOR domain from E. coli DamX== | | ==Solution Structure of the SPOR domain from E. coli DamX== |
| - | <StructureSection load='2lfv' size='340' side='right' caption='[[2lfv]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''> | + | <StructureSection load='2lfv' size='340' side='right'caption='[[2lfv]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2lfv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LFV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2lfv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LFV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LFV FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b3388, damX, yhfB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lfv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lfv OCA], [http://pdbe.org/2lfv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lfv RCSB], [http://www.ebi.ac.uk/pdbsum/2lfv PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lfv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lfv OCA], [https://pdbe.org/2lfv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lfv RCSB], [https://www.ebi.ac.uk/pdbsum/2lfv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lfv ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/DAMX_ECOLI DAMX_ECOLI]] Directly or indirectly interferes with cell division. | + | [https://www.uniprot.org/uniprot/DAMX_ECOLI DAMX_ECOLI] Directly or indirectly interferes with cell division. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 21: |
Line 22: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Ecoli]] | + | [[Category: Escherichia coli K-12]] |
| - | [[Category: Arends, S J.R]]
| + | [[Category: Large Structures]] |
| - | [[Category: Fowler, C A]]
| + | [[Category: Arends SJR]] |
| - | [[Category: Popham, D L]]
| + | [[Category: Fowler CA]] |
| - | [[Category: Weiss, D S]]
| + | [[Category: Popham DL]] |
| - | [[Category: Williams, K B]]
| + | [[Category: Weiss DS]] |
| - | [[Category: Bacterial cell division protein]] | + | [[Category: Williams KB]] |
| - | [[Category: Cell cycle]] | + | |
| - | [[Category: Cell division]] | + | |
| - | [[Category: Murein binding domain]] | + | |
| - | [[Category: Peptidoglycan binding domain]] | + | |
| - | [[Category: Rnp domain]] | + | |
| - | [[Category: Rnp fold]]
| + | |
| Structural highlights
Function
DAMX_ECOLI Directly or indirectly interferes with cell division.
Publication Abstract from PubMed
SPOR domains are present in thousands of bacterial proteins and probably bind septal peptidoglycan (PG), but the details of the SPOR-PG interaction have yet to be elucidated. Here we characterize the structure and function of the SPOR domain for an Escherichia coli division protein named DamX. Nuclear magnetic resonance revealed the domain comprises a four-stranded antiparallel beta-sheet buttressed on one side by two alpha-helices. A third helix, designated alpha3, associates with the other face of the beta-sheet, but this helix is relatively mobile. Site-directed mutagenesis revealed the face of the beta-sheet that interacts with alpha3 is important for septal localization and binding to PG sacculi. The position and mobility of alpha3 suggest it might regulate PG binding, but although alpha3 deletion mutants still localized to the septal ring, they were too unstable to use in a PG binding assay. Finally, to assess the importance of the SPOR domain in DamX function, we constructed and characterized E. coli mutants that produced DamX proteins with SPOR domain point mutations or SPOR domain deletions. These studies revealed the SPOR domain is important for multiple activities associated with DamX: targeting the protein to the division site, conferring full resistance to the bile salt deoxycholate, improving the efficiency of cell division when DamX is produced at normal levels, and inhibiting cell division when DamX is overproduced.
Nuclear Magnetic Resonance Solution Structure of the Peptidoglycan-Binding SPOR Domain from Escherichia coli DamX: Insights into Septal Localization.,Williams KB, Yahashiri A, Arends SJ, Popham DL, Fowler CA, Weiss DS Biochemistry. 2013 Jan 29;52(4):627-39. doi: 10.1021/bi301609e. Epub 2013 Jan 14. PMID:23290046[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Williams KB, Yahashiri A, Arends SJ, Popham DL, Fowler CA, Weiss DS. Nuclear Magnetic Resonance Solution Structure of the Peptidoglycan-Binding SPOR Domain from Escherichia coli DamX: Insights into Septal Localization. Biochemistry. 2013 Jan 29;52(4):627-39. doi: 10.1021/bi301609e. Epub 2013 Jan 14. PMID:23290046 doi:http://dx.doi.org/10.1021/bi301609e
|
