This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2cwt
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Catalytic base deletion in copper amine oxidase from arthrobacter globiformis== | ==Catalytic base deletion in copper amine oxidase from arthrobacter globiformis== | ||
| - | <StructureSection load='2cwt' size='340' side='right' caption='[[2cwt]], [[Resolution|resolution]] 1.82Å' scene=''> | + | <StructureSection load='2cwt' size='340' side='right'caption='[[2cwt]], [[Resolution|resolution]] 1.82Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2cwt]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2cwt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CWT FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TPQ:5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE'>TPQ</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cwt OCA], [https://pdbe.org/2cwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cwt RCSB], [https://www.ebi.ac.uk/pdbsum/2cwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cwt ProSAT]</span></td></tr> | |
| - | + | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PAOX_ARTGO PAOX_ARTGO] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/2cwt_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/2cwt_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cwt ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 28: | Line 29: | ||
</div> | </div> | ||
<div class="pdbe-citations 2cwt" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 2cwt" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Copper amine oxidase 3D structures|Copper amine oxidase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Arthrobacter globiformis]] |
| - | [[Category: Chiu | + | [[Category: Large Structures]] |
| - | [[Category: Hayashi | + | [[Category: Chiu YC]] |
| - | [[Category: Hirota | + | [[Category: Hayashi H]] |
| - | [[Category: Kamiya | + | [[Category: Hirota S]] |
| - | [[Category: Kawano | + | [[Category: Kamiya N]] |
| - | [[Category: Kim | + | [[Category: Kawano Y]] |
| - | [[Category: Kuroda | + | [[Category: Kim M]] |
| - | [[Category: Murakawa | + | [[Category: Kuroda S]] |
| - | [[Category: Okajima | + | [[Category: Murakawa T]] |
| - | [[Category: Taki | + | [[Category: Okajima T]] |
| - | [[Category: Tanizawa | + | [[Category: Taki M]] |
| - | [[Category: Uchida | + | [[Category: Tanizawa K]] |
| - | [[Category: Yamaguchi | + | [[Category: Uchida M]] |
| - | [[Category: Yamamoto | + | [[Category: Yamaguchi H]] |
| - | + | [[Category: Yamamoto Y]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Catalytic base deletion in copper amine oxidase from arthrobacter globiformis
| |||||||||||
Categories: Arthrobacter globiformis | Large Structures | Chiu YC | Hayashi H | Hirota S | Kamiya N | Kawano Y | Kim M | Kuroda S | Murakawa T | Okajima T | Taki M | Tanizawa K | Uchida M | Yamaguchi H | Yamamoto Y

